Vibrio sp. MA40-2: ACLKML_12290
Help
Entry
ACLKML_12290 CDS
T11938
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
via Vibrio sp. MA40-2
Pathway
via03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
via00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACLKML_12290 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
via03021
]
ACLKML_12290 (rho)
03019 Messenger RNA biogenesis [BR:
via03019
]
ACLKML_12290 (rho)
Transcription machinery [BR:
via03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACLKML_12290 (rho)
Messenger RNA biogenesis [BR:
via03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACLKML_12290 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
AAA_22
AAA
S1CSD-TOTE-2
FtsK_SpoIIIE
TP_0747_N
Motif
Other DBs
NCBI-ProteinID:
XNQ75617
LinkDB
All DBs
Position
2:1013461..1014720
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNRPVSELVKLGESLGLENLARLRKQDIIFSTLKAHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKDGERYFALLKVNTVN
HDKPDNARNKILFENLTPLHANERMMMERGNGSTEDITARILDLASPIGKGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIGF
KRSGTRREELLTKSDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNNEFFDAMRRQ
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactgaagaacaggcctgtatctgagcttgtgaaacttggcgaaagc
ctcggtctggaaaaccttgcacgtctacgtaaacaagacattattttctctactcttaag
gctcacgcgaaaagcggtgaagatatttttggagatggtgtactagaaatccttcaagac
ggttttggatttttacgtagtgcagatagttcctatcttgcgggaccagacgatatttac
gtgtccccaagccaaatacgccgatttaatttacgtactggtgattcgatcgccggtaaa
attcgtcctcctaaagacggcgagcgttattttgctttgttgaaagttaatactgttaac
catgacaaaccagataatgcacgtaataaaatactttttgaaaacttaactccattgcat
gcgaatgaacgtatgatgatggagcgtggtaatggttctaccgaagatattactgcccgt
attttggatttggcctcacctattgggaaaggtcaacgtggtttgattgttgctccgcca
aaagccggtaaaacaatgctactgcaaaacatcgctcaaagtatcgcttacaatcaccct
gagtgtgaactgatggttttactgatagatgagcgtccagaggaagtaacggaaatgcaa
cgccttgttaaaggtgaagttgtggcgtcgacgtttgatgaacctgcgtctcgtcatgtt
caagttgcagatatggtaatagagaaagccaaacgtcttgttgagcataaaaaagatgtg
gttattctgcttgattcaattactcgtcttgctcgtgcatacaacacagttgttccttca
tcaggaaaagtgttaaccggtggtgttgatgctaatgcattgcatcgtccaaaacgattc
ttcggtgcggcacgtaatgttgaagaaggtggtagtttaacgattattgccacagcactg
gttgataccggttcgaaaatggatgaagtaatctacgaagagtttaaaggtacaggtaat
atggaattacatcttaaccgcaaaattgcggaaaaacgtgtcttccctgccattggcttt
aaacgttctggaacgcgtcgcgaagaattgctcacaaaatccgatgaactgcagaaaatg
tggattttgcgtaaaattgtccacccaatgggtgagacagacgcaatggaatttctaatc
gataagttagcaatgactaaaacaaataatgagttttttgacgcaatgcgtcgacaataa
DBGET
integrated database retrieval system
