Vibrio sp. MA40-2: ACLKML_12705
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Entry
ACLKML_12705 CDS
T11938
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
via Vibrio sp. MA40-2
Pathway
via03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
via00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACLKML_12705 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
via03021
]
ACLKML_12705 (rpoB)
03400 DNA repair and recombination proteins [BR:
via03400
]
ACLKML_12705 (rpoB)
Enzymes [BR:
via01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACLKML_12705 (rpoB)
Transcription machinery [BR:
via03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACLKML_12705 (rpoB)
DNA repair and recombination proteins [BR:
via03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACLKML_12705 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-ProteinID:
XNQ75682
LinkDB
All DBs
Position
2:1091341..1095369
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AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIDQDPEGQYGLEAAFRSVFPIQ
SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVVFDRDAPAGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLYVRIDRRRKLPASIILRALDKTTEEILDIFFEKVNFEVKDQTLMME
LVPDRLRGETANFDIEANGKVYVETGRRVTARHIRSLEKDGVEFIEVPVEYIVGKVAAKD
YINEDTGEVIVAANQEISLEALANLSQAGHKNLQVLFTNDLDHGPFMSDTLRVDSTVDRL
SALVEIYRMMRPGEPPTKDAAEALFQSLFFAVERYDLSTVGRMKFNSSIGREDAGEQGIL
DETDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNDFGFLETPYRRVVDGIVT
DEVDYLSAIEEGQFIIAQANSALTETNSFSEELVTARQKGESGLHPRDQVNYMDVATNQV
VSVAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERNVAVDSGVTAVAKR
GGMIQSVDASRIVVKVNESELVPGEAGIDIYNLTKYTRSNQNTCINQRPTVLPGEPVAKG
DVIADGPSTDLGELALGQNIRLAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELSCVA
RDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDL
TEEFEILEGGLLARVRAVLVSGGYSEAKLESIHRKQWLEQTLEDDELQSQLEQLAEQWDE
LKADFDKKFENKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHMGLAAKGIGDKINQMLKEQQELAR
FREFLQKVYDLGDTRQTVNIAELSDDEVRTLANNLRGGLPIATPVFDGAPEGSIKELLKL
GDLPESGQLRLFDGRTGDEFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHSMDPGMPE
SFNVLLKEIRSLGINIELEDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttataccgagaaaaagcgcatccgtaaggattttggtactcgtccacaa
gttttggacattccatatttgctatcgatccagctggattctttcgataaatttatcgat
caagatcccgaaggacaatacggtcttgaagctgcttttcgttctgtatttcctattcag
agctataacggcaattctgagctacaatacgttagctatcgtcttggcgagcctgttttt
gatgttaaagaatgtcaaattcgtggtgtcacctattcaaaaccactgcgcgttaaactg
cgtttagttgtatttgatagagatgcaccagcaggtacagtaaaagacattaaagaacaa
gaagtctacatgggtgaaatcccattgatgacagacaatggtacctttgtaattaatggt
actgagagggttatcgtatcccagttgcaccgaagcccaggcgtgttcttcgacagcgat
aagggtaaaactcactcatcaggtaaagttttatataatgcacgtgttattccttatcgt
ggctcatggttagactttgagttcgatccaaaggacaacttgtacgtgcgtatcgaccgt
cgtcgtaagcttcctgcctctatcatacttcgtgcattggataaaacgacagaagaaatt
ttggatatcttcttcgaaaaagttaatttcgaagtgaaagaccaaactcttatgatggag
ctagttcctgatcgcctacgcggtgaaacagcgaactttgatattgaagcgaacggtaaa
gtttacgttgaaaccggtcgtcgtgttacggcacgtcacatccgcagtcttgaaaaagat
ggcgtcgagttcatcgaagtaccagtagagtatattgttggtaaagtagcggctaaagac
tatatcaatgaagataccggcgaagttattgttgctgccaaccaagagattagcttagaa
gcattagcgaatctttctcaagctggccacaaaaacttacaggttctgttcactaacgat
ttagaccacggtccattcatgtctgacacattacgtgttgacagcaccgttgaccgttta
tctgcgctagttgaaatctatcgcatgatgcgtcctggtgagccaccaacaaaagatgca
gcagaagctttattccaaagcttattcttcgctgtagaacgctatgatttatcgactgtt
ggtcgaatgaagtttaatagctctattggtcgtgaagatgcgggtgagcaaggtattctt
gacgaaaccgacatcattgaagtaatgaaaaaacttatctcgattcgtaacggcaaaggt
gaagtggatgatattgatcacttaggaaaccgtcgtattcgtagcgtaggtgagatggca
gaaaaccaattccgtgttggtttagtacgtgttgaacgtgcggttaaagaacgcctaagc
cttggtgatcttgacgcaatcatgcctcaagatttgatcaacgctaagcctatttctgct
gctgttaaggaattctttggttcttctcagctttcacagtttatggatcagaacaaccca
ttatcagaagtaacgcacaaacgtcgtatttctgcattgggtccaggtggtcttactcgt
gaacgcgcagggtttgaagtacgtgatgttcacgtaactcactatggtcgtctatgtccg
atcgaaacacctgaaggtccaaacatcggtctaattaactcgttgtctgcttttgcacgt
tgtaacgatttcggtttcttagaaacaccttatcgtcgtgtagttgatggaattgtaact
gatgaagtagattacctatctgctattgaagaaggtcagttcattattgctcaggcaaac
tctgccttgactgaaacgaattcgtttagtgaagaattagttaccgctcgtcaaaaaggc
gaatctggtcttcacccacgtgatcaagttaactacatggacgttgcaaccaatcaggtt
gtatctgttgctgcatcgcttattccgttcctagaacacgatgatgcgaaccgtgcctta
atgggtgcgaacatgcaacgtcaagccgttccaacattacgagctgataagcctcttgtt
ggtacaggtattgaacgtaatgtagctgtcgattctggtgttacagcagtagcaaaacgt
ggcggtatgatccagtcagttgacgcatctcgtatcgtagttaaggttaacgaaagtgaa
ttagtacctggcgaagctggtatcgatatttacaacttaaccaaatatacgcgttctaac
cagaacacatgtattaaccaacgtccaaccgtattgcctggtgagccagtagcaaaaggt
gatgttattgctgatggtccttcaacagaccttggtgaattggcgcttggtcaaaacatt
cgcttggcatttatgccatggaacgggtacaactttgaggattcaatccttgtatctgag
cgtgttgttcaagaagaccgttttactactattcatatacaagaattatcttgtgtagca
cgtgataccaagctgggttcagaagagatcacagctgatattccaaacgtaggtgaatct
gctctatctaaactagatgagtcgggtatcgtttacattggtgctgaagttaagggtggc
gacattcttgttggtaaagtaacaccaaaaggtgaaactcaactgactcctgaagaaaaa
ctcttacgagctatcttcggtgaaaaagcatcggatgttaaagatacatcattgcgtgtg
cctaattctgtttcaggtacgattatcgatgttcaagtcttcactcgtgatggcgtggaa
aaagataagcgtgcacttgaaattgaacaaatgcagctaaaagaagcgaagaaagacctc
accgaagaatttgagattctagaaggcggtttacttgcgcgtgttagagctgtacttgtg
tcaggcggttattctgaagctaagcttgagtctatccaccgtaaacaatggctagaacaa
acgttagaagacgatgagctacaatcacagcttgagcaactagctgagcagtgggatgag
cttaaagcagatttcgataagaagtttgaaaacaaacgtcgtaaaatcactcaaggagac
gatttagctcctggtgttcttaagattgttaaagtttatctagcggttaagcgtcgtatt
cagcctggtgataaaatggccggccgtcatggtaacaaaggtgtaatctctaagattaac
cctgttgaagacatgccatacgatgaaaaaggtcaacctgttgatatcgtattgaaccca
ctaggggttccatcgcgtatgaacatcggtcagatccttgaagttcatatgggtctagct
gctaaaggtattggtgacaagatcaaccaaatgctcaaggagcagcaagaacttgctcgt
ttccgtgaattcttgcaaaaggtttatgatcttggtgacacacgtcagacagtaaatatc
gcagagctttctgatgatgaagttcgtacattagcaaataaccttcgtggtggtttgccg
attgcaacacctgtatttgatggtgcgccagaaggctcaatcaaggaactattgaaattg
ggtgacttaccagaatctggtcagttacgtttatttgatggtcgtactggtgatgaattt
gagcgtcctgtaaccgttggttacatgtatatgcttaaactaaaccaccttgttgatgac
aagatgcatgcacgttctacaggctcgtacagcttagtaactcagcaaccactaggtggt
aaagctcagttcggtggccagcgtttcggtgagatggaagtatgggcgctagaagcatac
ggtgccgcttatacactacaggaaatgttgaccgttaagtccgatgacgtaaatggccgt
actaagatgtataagaacatcgtagacggaaaccatagtatggatcctggtatgcctgaa
tccttcaacgtactgttgaaagagattcgctcacttggtatcaacatcgagctagaagac
gaagagtaa
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