Vibrio sp. STUT-A11: VspSTUT11_00350
Help
Entry
VspSTUT11_00350 CDS
T10419
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vib Vibrio sp. STUT-A11
Pathway
vib03420
Nucleotide excision repair
vib03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VspSTUT11_00350
03430 Mismatch repair
VspSTUT11_00350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vib03400
]
VspSTUT11_00350
Enzymes [BR:
vib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VspSTUT11_00350
DNA repair and recombination proteins [BR:
vib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VspSTUT11_00350
MMR (mismatch excision repair)
Other MMR factors
VspSTUT11_00350
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
Motif
Other DBs
NCBI-ProteinID:
BDR12059
LinkDB
All DBs
Position
1:46073..48247
Genome browser
AA seq
724 aa
AA seq
DB search
MMDPSLLLDGLNDKQREAVAAPLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMS
VTFTNKAAAEMRGRIEELMMGSASGMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQ
QRLIKRLVKAQNLDEKQWPARQVGWWINGKKDEGLRPMHIDAYHDPVTKTYLQLYTAYQE
ACDRAGLVDFAEILLRAHELLRDNKFVREHYQARFKHILVDEFQDTNNIQYAWLRMMAGP
DCHVMIVGDDDQSIYGWRGAKVENIEKFTREFPSVSTIRLEQNYRSTKTILEASNALITN
NTERMGKELWTDGVVGEPISIYSAYNELDEARFAVTKIKEWQDKGGVLNDAAMLYRNNAQ
SRVLEEALIQAGLPYRIYGGMRFFERQEIRDALSYLRLMANRNDDAAFERVVNTPTRGLG
DKTLETIRRAARDRGCTMWEASIAMLDEKVLSGRAAGALSRFIELITALEDDTLEMPLHE
QTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEKPEEAEEMSLLTAFLTHAA
LEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLC
YVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPETCLDEVRMKAQVSRPSTSGRF
SQTAVKENFNETGFSLGTRVMHPKFGEGTIINFEGSGPQSRVQIAFNGEGIKWLVTAYAK
LEKL
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgatggatccatctctattactcgacggtttgaacgataaacagcgtgaagccgttgca
gcacctctagaaaacttactcgtccttgctggtgcagggagtggtaagactcgcgttctt
gttcaccgaattgcctggctgatgtctgtagaacaagcttctccattctcaatcatgtca
gtaacctttactaacaaagctgcagcggagatgcgtggccgtattgaagagttgatgatg
ggcagtgcgtctggcatgtggaatggtactttccatggtatttgtcatcgtattctgcgc
gcgcattatcttgatgccaagctaccggaagattttcagatcatcgacagtgatgaccag
cagcgtctgattaagcgcttggttaaagcacaaaacctggatgaaaagcagtggcctgcg
cgtcaggtgggttggtggatcaatggcaagaaggatgaaggtttacgtccgatgcatatc
gatgcgtaccacgatccggtaaccaaaacttacctgcagttgtataccgcttatcaggaa
gcctgtgatcgtgctggactggtcgattttgctgagatcttgcttcgcgcacatgagcta
ctgcgcgataacaagtttgtccgcgagcattaccaggcacgctttaaacacattctggtc
gacgaatttcaggataccaacaacatccagtacgcttggttgcgtatgatggccggaccg
gattgccatgtgatgatagtcggtgacgatgaccagtcaatttatggctggcgtggtgcg
aaagtggaaaacatagagaagtttactcgtgagttccctagcgttagtaccattcgtctg
gaacaaaattaccgttcaacgaagacaattctggaagcgtcgaatgccctgattactaac
aataccgagcgtatgggtaaagaactttggaccgatggtgtggttggcgagccaatctcg
atctacagtgcttacaacgagcttgacgaagcccgttttgccgtcaccaaaatcaaagag
tggcaagataagggcggtgtcctcaatgatgccgcaatgctttaccgtaataacgcccag
tctcgtgttctggaggaggcgttaattcaagctggccttccttaccgtatttatggtggt
atgcgattcttcgaacgtcaggaaatcagagatgcattgagctacctgcgtttgatggct
aaccgcaatgatgatgctgcatttgagcgagtcgtgaacacaccgacgcgtggcctaggt
gataaaacacttgagacgattcgtcgtgccgctcgtgatcgcggctgtactatgtgggaa
gccagtatcgcgatgctggatgagaaagtgctatctggtcgagctgcaggcgcattgagt
cgttttatcgaactcatcacggcattggaagatgatacgctggagatgcctctgcacgag
caaacagaccatgtgatcaaatactcaggtttgtttgccatgtatgagcaagaaaaaggt
gaaaagtccaaagcgcgtattgagaacttggaagaattggtgacagcgacccgccagttt
gagaagccggaggaagcggaagagatgtctctgctgacggcattcctgactcatgctgcg
cttgaagctggcgaggggcaggcggatgaatttgaagatgcggtgcaattgatgactttg
cacagtgcaaaaggtctggagttcccattagtgttcatggtgggggttgaagaaggcatg
ttcccaagtcagatgtccgccgaagaagccgggcgtctagaagaagaacgtcgcctgtgc
tatgtcggtatgacgcgcgcaatgcagaagctctacatcacttatgccgaaatgcgtcgt
ttgtatggtcaggacaagtaccacaagccatcgcgttttattcgtgagctgcctgaaact
tgtctggatgaagtgcgcatgaaagcgcaagtgagtcgcccgtcgactagcggccgtttt
agtcagactgcagtcaaagagaactttaacgagactggcttttcgttaggtactcgcgtg
atgcatcctaagtttggtgagggtaccatcattaactttgaaggcagtggcccacagagc
cgagtgcaaattgctttcaatggcgaagggattaagtggttagtgaccgcttatgccaaa
cttgagaagctgtaa
DBGET
integrated database retrieval system
