Vibrio sp. STUT-A11: VspSTUT11_01200
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Entry
VspSTUT11_01200 CDS
T10419
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vib Vibrio sp. STUT-A11
Pathway
vib03020
RNA polymerase
Brite
Enzymes [BR:
vib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VspSTUT11_01200 (rpoC)
Transcription machinery [BR:
vib03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VspSTUT11_01200 (rpoC)
DNA repair and recombination proteins [BR:
vib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VspSTUT11_01200 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
BDR12144
LinkDB
All DBs
Position
1:154766..158968
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKSQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLGSMDMHAEAEQMREELESTNSETKRKKVTKRLKLVEAFIASGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINVKGEGMYLSGPAEAEKAYRTK
QAELHARVKVRITETVVDEDGNSTTSTGMVDTTIGRAMLWQIVPSGLPYSIVNQKLGKKQ
ISNLLNEAYRKLGLKDTVIFADQIMYAGFAYAALSGVSVGIDDMVVPPAKYTEIAEAEEE
VREIQEQYQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSETVINRDGEEEQQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTHEGVDMMPHIEGGDVKVALSELAL
GRVVAEDVLKPGTEDVLIPRNTLIDEKWCQIMEENSVDSMKVRSVVTCDSDFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSVQAKNNGSIKL
HNAKSVVADDGKIVITSRATELTIIDEFGRTKEKHKLPYGTLLSKGDGDTVQAGETVANW
EAHTLPIITEVAGRIQFVDMIDGVTVSRQTDDLTGLSSSEVTDAAARPSAGKDMRPAIKL
VDEQGNDVMIPGTDMPAHYFLPGKAIVNIEDGAAVGVGATLARIPQKSGGNKDITGGLPR
VADLFEARKPKEPAILAEHTGTVSFGKETKGKRRLVITRDSGEAYEEMIPKHRQLNVFEG
EKVERGDVIADGPESPHDILRLRGVHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITFAGDSEFLPGEQVEYSQVKIANRNLEAEGKEPARFERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQERQAKRTEAQEGPS
AEQATDNLAALLNAGFSSEE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcacagcataagaccgaagagtttgatgcaatc
aaaatcggtctatcttcaccagacatgatccgttcatggtctttcggtgaagttaaaaaa
cctgaaacgatcaactatcgtacgttcaaacctgaacgcgatggtctgttctgtgcgcgt
atttttggtccagttaaagactacgaatgtctttgtggtaaatacaagcgcttgaagcac
cgtggtgttatctgtgagaagtgtggtgtagaagttacacaaactaaagttcgtcgtgac
cgtatgggccacattgagcttgcttcaccagtagctcacatctggttcctaaaatcgcta
ccgtctcgtatcggtctactaatggatatccctctacgtgatatcgaacgtgttctttac
ttcgaaatgtacgtagtaactgaaccaggtatgacggatctagaaaagagtcagatgctt
actgaagaggagtatctggaccgtctagaagagtggggcgacgagttcactgctaagatg
ggtgcagaagctatcaaggacctactaggttctatggatatgcacgccgaagctgaacaa
atgcgcgaagagctagagtctacaaactctgaaactaagcgcaagaaagtcactaagcgt
cttaaactggtagaagcgttcatcgcatcgggtaacaacccagagtggatgatcctgact
gttcttccagtacttccgccagatctacgccctctagtaccactagatggcggtcgtttt
gcgacttctgatctgaacgatctataccgtcgtgtgatcaaccgtaacaaccgtttgaag
cgtcttctagagctagcagctccggacatcatcgtacgtaacgaaaaacgtatgctgcaa
gagtctgttgatgcgctactggataacggtcgtcgtggtcgtgcgatcacaggttcgaac
aagcgtcctctgaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aaccttctaggtaaacgtgtagactactctggccgttctgtaatcacagtaggtccatac
cttcgtctacaccagtgtggtcttcctaagaagatggcacttgaactattcaaaccattc
atctacagcaagctagagactcgtggtcttgcgactacaatcaaagctgctaagaaaatg
gtagagcgtgaagaagcggttgtttgggatatcctggacgaagtaatccgtgaacaccca
gtactattgaaccgtgcaccgacacttcaccgtctaggtatccaggcgttcgaaccagta
ctaatcgaaggtaaagcgattcagctacacccacttgtttgtgcggcgtacaacgcggac
ttcgatggtgaccaaatggcggttcacgtacctctaactctagaggcacagcttgaagct
cgtactctgatgatgtcgacaaacaacattctgtcgccagcgtcaggcgatccgatcatc
gtaccttctcaggacgttgtattgggtctttactacatgactcgtgaaaagatcaacgtg
aaaggtgaaggcatgtacctttctggcccagcagaggctgagaaagcataccgcactaaa
caagctgaacttcacgcacgcgttaaagtacgtattactgaaacagtcgtagacgaagac
ggcaacagcactacatctactggtatggttgataccactatcggtcgtgcaatgctttgg
caaatcgtgccatctggtctgccgtacagcatcgttaaccaaaagctaggtaagaaacaa
atctctaacctacttaacgaggcgtaccgtaagctaggtttgaaagacacggtaatcttc
gctgaccaaatcatgtacgcaggttttgcttacgcagcactatctggtgtatcggttggt
atcgacgatatggttgtaccgccagctaagtacactgaaatcgcagaagcggaagaagaa
gtacgtgaaatccaggaacagtaccaatctggtcttgttactgcgggcgaacgctacaac
aaagtgatcgatatctgggcatcgaccaacgaccgcgttgcgaaagcaatgatggagaac
ctgtcatctgaaacggtaattaaccgtgacggtgaagaggaacaacaagagtcgttcaac
agcatctacatgatggccgactcaggtgctcgtggttctgcagcacagattcgtcagctt
gctggtatgcgtggtctgatggcacgtccagatggttcaatcatcgaaacgccgatcact
gcgaactttaaagaaggtctaaacgtacttcagtactttatctcaacgcacggtgctcgt
aagggtcttgcggatacggcactgaaaacagcgaactcgggttacctaactcgtcgtcta
gtagacgttgctcaagacgttgttgtaactgaacatgactgtggcactcacgagggtgtt
gacatgatgcctcatatcgagggtggtgatgttaaagttgcactttctgagctagctcta
ggtcgtgttgttgctgaagacgttctaaaacctggtactgaagatgttcttattccacgt
aacaccctgatcgatgagaagtggtgtcaaatcatggaagagaactcagtagacagcatg
aaagtacgttctgttgttacttgtgattctgacttcggttgttgtgcacagtgttacggt
cgtgacctagcacgtggtcacctagtgaaccaaggtgaagcagtaggcgttatcgctgct
cagtctatcggtgagccgggtacacagcttacgatgcgtacgttccacatcggtggtgcg
gcatcgacagcagcagctgaaaacagcgttcaagcgaagaacaacggttctatcaagcta
cacaacgctaaatcagtagtggcagatgacggtaagatcgttatcacctctcgtgcgact
gaactaaccatcatcgatgagtttggccgtactaaagagaagcacaaactgccttacggt
acactactaagcaaaggcgacggtgacacagttcaagctggtgaaacggtagctaactgg
gaagcgcacacactaccaatcatcactgaagtagcgggtcgcatccagttcgtagatatg
atcgacggtgtaacagtttctcgccaaacagatgacctaacaggtctatcttcaagcgaa
gtaactgacgcagcagcgcgtccatctgcaggtaaagatatgcgtccagctatcaaactt
gttgatgagcaaggtaacgatgtaatgatccctggtactgatatgccagctcactacttc
ctgcctggtaaagcgattgtaaacatcgaagatggcgcagcagtaggcgtaggtgcaaca
cttgcacgtattcctcagaaatctggcggtaacaaagatatcaccggtggtcttccacgc
gttgctgacctgttcgaagctcgtaagcctaaagagcctgcgatccttgctgaacacaca
ggtacagttagcttcggtaaagagaccaaaggtaagcgtcgtctagtgatcactcgcgac
agcggtgaagcatacgaagagatgattcctaagcatcgtcagcttaacgttttcgaaggt
gagaaggttgagcgtggtgatgtcatcgctgatggtccagagtctccacatgacatccta
cgtctacgtggcgtacacgcggtaactcagtacatcgctaacgaagtacaagaagtttac
cgtctacaaggcgttaagattaacgataagcacattgagactatcgttcgtcaaatgcta
cgtaagtgtactatcacatttgctggtgattctgagttcctacctggtgagcaagtagaa
tactcacaagttaagattgctaaccgtaatctagaagctgaaggtaaagagcctgcgcgt
ttcgaacgtgaacttctaggtattactaaagcgtctctagcgactgagtcgttcatctct
gcggcatcgttccaggagacaactcgcgtactaacagaagctgcagtttctggtaagcgt
gatgaccttcgtggtctgaaagagaacgtaattgttggtcgtctgatcccagctggtact
ggtttcgcataccatcaagagcgtcaagctaaacgtactgaagcgcaagaaggcccgtct
gctgaacaagcaacggataacctggcagcacttctaaacgctggcttctcttctgaagaa
taa
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