Vibrio sp. STUT-A11: VspSTUT11_03190
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Entry
VspSTUT11_03190 CDS
T10419
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
vib Vibrio sp. STUT-A11
Brite
KEGG Orthology (KO) [BR:
vib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vib03021
]
VspSTUT11_03190 (rapA)
Transcription machinery [BR:
vib03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
VspSTUT11_03190 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
AAA_34
COG2_N
Helicase_C_2
WWE
Motif
Other DBs
NCBI-ProteinID:
BDR12343
LinkDB
All DBs
Position
1:407038..409947
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AA seq
969 aa
AA seq
DB search
MTFALGQRWISDTESDLGLGTVVAMDARTVTFMFAASEENRVYARNDAPVTRVTFNVGDV
IDCQEGWSLKVEEVLEDEGLYTYFGTREDTQETAVVLREIFLSNQIRFNKPQDKLYAGQI
DRMDNFVLRYRALTNQFEQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVG
LGKTIEAGMIIHQQVLSGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCIEAFA
DAENPFDTQQYVLCSLDFLRKSRKRFEQALEGEWDLLVVDEAHHLEWSQDKPSREYQVVE
GLAERTPGVLLLTATPEQLGRESHFARLRLLDPDRFYDYEAFVEEEEQYAPVADAITSLF
TGEKLPNDAKNQITELLSEQDVEPLFRIIESNSDEEEKASARQELIDNLMDRHGTGRVLF
RNTRAAIKGFPARNVHLMPMDIPQQYTTSMRVAGMIGGKMSSEARAMKNLYPEEIFQEFE
GDESSWWQFDSRVNWLLEKVTEKRSEKILVIASRASTALQLEQALREREGIRATVFHEGM
SILERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLD
RIGQNRDIDVHVPYLKGTSQAILARWFDEGLNAFAETCPTGRAVYDKYSDALIEILASGD
TSELDGIIEESAKMNKQLKSQLEQGRDRLLEMHSNGGEKAQQIVEKIASTDGDTNLVTFA
LSLFDTIGLNQDDKGENALIVTPSERMMVPSYPGLPYEGATITFDRETALSREDMHFISW
EHPMIQGGIDLLMSEGVGTSAVSLLKNKALPVGTILLELIYAVDAQAPKRSGIARFLPKT
PIRLMMDARGNDLSAQVEFESFNRQLSPVNRHLGSKLVTSVQKDVHRLIEAGDGLVEQKV
EEVRKQAQQDMQHSLNAELERLQALKAVNPNIRDEEIQTIEGQIKELTGYINQAQVQLDS
LRLIVVSHN
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgctttggggcagcgctggatcagcgatacggaaagcgatttaggtttaggt
acggttgttgcgatggatgctcgtactgtgacctttatgtttgcagcatcagaggaaaac
cgagtttacgcacgcaatgatgcacctgttacccgagtgacgtttaacgttggtgatgtt
atcgattgccaggaaggttggtctttgaaagtcgaagaagtgctggaagatgaaggcctg
tacacctacttcggtactcgtgaagatacacaggaaacggcagtcgtattgcgtgagatt
ttcctgagcaatcaaattcgcttcaataagcctcaagacaagttgtatgcaggtcaaatt
gaccgtatggacaacttcgttctgcgttaccgtgcactaaccaatcagtttgaacaacac
aagagcccaatgcgtggcctttgcggtatgcgtgctggtctgattcctcatcagctttac
attgcgcatgaagttggtcgccgtcacgcacctcgtgtactactggccgatgaagttggt
ctgggtaaaaccatcgaagcgggcatgatcattcaccagcaagtcctgtcgggtcgcgct
gagcgtattttgatcgttgtaccggaaacactgcagcatcaatggctggtggagatgatg
cgtcgtttcaatctgcatttctcaatctttgatgaagagcgttgtattgaagcgttcgcg
gatgcagaaaacccatttgatacccagcaatacgtattgtgttcactggatttcctgcgt
aagagccgtaagcgttttgagcaagcgctggaaggggaatgggatctactggttgtcgat
gaggcgcatcacctagagtggagtcaggacaaaccaagccgtgaataccaagtcgtggaa
ggtttggctgaacgcacaccaggcgtattgctactgaccgcaactcctgagcaattaggt
cgtgagagtcactttgctcgtctgcgcctgcttgaccctgatcgtttctacgattatgaa
gccttcgttgaggaggaagagcaatacgcaccagttgctgatgcgattacttctctgttt
actggtgaaaaactgcccaacgacgctaaaaaccaaatcacagaattattgtctgagcag
gatgttgaaccgctgttccgcattattgaaagcaacagtgacgaagaggaaaaagcgtct
gcgcgtcaggagttgatcgacaacctgatggatcgccacggtacgggccgtgttttgttc
cgaaacacacgtgcggcaatcaaaggtttccctgcgcgtaatgtgcacttgatgccaatg
gatatcccacagcaatacacgacgtcaatgcgagtggctggcatgatcggcggcaagatg
agttcggaagctcgtgcgatgaaaaacctttaccctgaagagatcttccaggagtttgaa
ggtgatgaatcaagctggtggcagtttgactcgcgtgtgaactggctactggaaaaagta
acagaaaaacgcagcgagaagatcctggttattgcttctcgtgcaagtacggctttgcag
ttagaacaggcattgcgtgaacgcgaaggcatccgtgcgaccgtgttccacgagggcatg
tcaattctagaacgtgataaagcagcggcttacttcgcacaagaagagggcggcgctcag
gttcttatctgtagtgaaattggctcagaaggtcgtaacttccagttcgctaaccagttg
gtgatgtttgatctgccgttcaacccagatttgcttgagcagcgtatcggtcgtttggac
cgtatcggccaaaaccgcgacattgatgttcacgttccttacctgaaaggtacatcgcaa
gcgatcctggcgcgttggttcgatgaaggcttgaatgcatttgctgagacttgtccaacc
ggtcgtgcggtttacgataaatactcggatgcgttgattgaaattctggcatcaggtgac
accagtgaactggacggcatcattgaagaatcagcgaaaatgaacaaacagctgaagtct
caattggagcaaggtcgtgatcgtctgctagaaatgcactctaacggtggtgaaaaagca
cagcaaatcgttgagaaaatcgcttcaacggatggtgataccaatctggtgacttttgct
ctgtcgctgttcgataccattggtctgaatcaggatgataagggggaaaacgcccttatt
gtgacgccatctgaacgcatgatggtaccgagctacccgggtctgccttatgaaggtgcg
accattacgtttgatcgtgaaaccgcgctgtcacgtgaagatatgcactttatcagttgg
gagcacccaatgattcagggcggtattgatctgctaatgagtgagggcgtgggtacatct
gcggtttcgttgctgaaaaacaaagccttgccagtcggtacgattctgcttgagttaatt
tacgcagtcgatgcccaagctccgaaacgcagcggtattgcacgcttcctgccaaaaaca
ccgattcgcctaatgatggatgcgcgcggtaacgacttatctgcacaagttgagtttgaa
agcttcaaccgtcagcttagcccggtaaaccgccatcttggcagtaagctggtaacgtcg
gtacaaaaagatgtacaccgtttgatagaagcgggtgatggactggttgagcagaaagtc
gaagaagtgcgtaagcaagctcagcaagacatgcagcatagcttgaacgcagagcttgag
cgtttgcaggcactgaaagcagtcaacccgaacattcgtgatgaagaaatacaaacgatt
gaagggcagattaaagagctgacaggctacattaaccaagctcaggtccaactggattcg
ctacgtttgattgtggtcagccacaattaa
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