Vibrio sp. STUT-A11: VspSTUT11_04310
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Entry
VspSTUT11_04310 CDS
T10419
Symbol
truD
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
vib Vibrio sp. STUT-A11
Brite
KEGG Orthology (KO) [BR:
vib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vib03016
]
VspSTUT11_04310 (truD)
Enzymes [BR:
vib01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
VspSTUT11_04310 (truD)
Transfer RNA biogenesis [BR:
vib03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
VspSTUT11_04310 (truD)
Prokaryotic type
VspSTUT11_04310 (truD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
BDR12455
LinkDB
All DBs
Position
1:528389..529432
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AA seq
347 aa
AA seq
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MSDILSSLAYLTGKPVASAKIKAQPEHFQVSEDLGFAFTGEGEHLMVRIRKTGENTSFVA
NELAKACGVKSKDVSWAGLKDRHAVTEQWLSVHLPKGDTPDFSAFLAQYPNIEILATDRH
NKKLRPGDLVGNGFVVTLSEVTDIADVERRLEKIKQVGVPNYFGAQRFGNDGNNLEEARR
WGRENVRTRNQNKRSMYLSAARSWIFNRIVSTRLEQDLFDKFIDGDIAQTSTGNVTVDAS
NIADMQAQFIDGDAAITAALAGDNALPTQADALALEQPFLDEEPDLMALIRGNRMRHDRR
NIALKPQDLAWSVDGNNITLTFSLDAGSFATSIVRELVNEVKVEREY
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacattttatcttcattggcttatcttacgggtaagccagtcgcatctgcgaaa
atcaaagcgcaaccagaacactttcaggttagcgaagatctcggctttgcctttactggc
gagggcgagcatttgatggtgcgtattcgtaaaacgggtgaaaacaccagctttgttgct
aacgagttagcgaaagcgtgtggtgtgaaatctaaggatgtgagctgggctggcttaaaa
gaccgccatgcggtgacagagcaatggctgagcgttcatttaccaaaaggtgacacacca
gacttttccgcgttcttagcgcaatacccaaatattgaaattctggcaaccgatcgtcac
aacaaaaagttacgtccgggtgatttggttggcaatggatttgtcgtcactttgtctgaa
gtgacagacatcgcggatgtagagcgtcgtcttgaaaaaataaaacaagttggtgtaccg
aactactttggtgctcagcgctttggcaacgatgggaataacctggaagaagcgcgtcgt
tggggacgtgaaaacgtacgtacgcgtaatcaaaataagcgcagtatgtacctgtctgct
gcgcgatcatggatttttaaccgcatcgtctctacgcgtttagaacaggatctattcgat
aagtttatcgatggtgatatcgcacagacttcaacaggtaacgtcacggtggatgcgagc
aacatcgcagatatgcaggctcagtttatcgacggagacgcggctatcactgctgcactt
gccggtgataatgcattgccgacccaagccgatgctttggcattagagcaaccgttcttg
gatgaagagcctgacttaatggcacttattcgtggtaaccgaatgcgtcatgatcgccgt
aatattgcattaaagccgcaagatcttgcctggagtgttgacggtaacaatattaccctg
actttctcattagatgcaggctcgtttgctacatccattgttcgtgagttagtcaacgag
gtaaaggtagaaagagaatactaa
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