Vibrio sp. STUT-A11: VspSTUT11_05380
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Entry
VspSTUT11_05380 CDS
T10419
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vib Vibrio sp. STUT-A11
Pathway
vib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VspSTUT11_05380 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vib03019
]
VspSTUT11_05380 (pnp)
03016 Transfer RNA biogenesis [BR:
vib03016
]
VspSTUT11_05380 (pnp)
Enzymes [BR:
vib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
VspSTUT11_05380 (pnp)
Messenger RNA biogenesis [BR:
vib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VspSTUT11_05380 (pnp)
Transfer RNA biogenesis [BR:
vib03016
]
Prokaryotic type
tRNA degradation factors
VspSTUT11_05380 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
OB_RRP5_4th
KH_2
S1_RRP5
S1_2
KH_SLS1_2
KH-I_KHDC4-BBP
DUF3016
Motif
Other DBs
NCBI-ProteinID:
BDR12562
LinkDB
All DBs
Position
1:664602..666737
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AA seq
711 aa
AA seq
DB search
MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVAGQDFFPL
TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDSFKNEVQVIATVVS
VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSQTELDASRLDLVV
AGTESAVLMVESEADNLTEEEMLAAVVYGHDQQQVVINAINEFKAEVATPAWDWVAPEEN
TALNNKIAELAEAKLVEAYQITEKMARYDRIHAIAAEVNEVLLAEDPEADTKEIHTIFHD
LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGILPRTHGSALFTRGETQAIVTATLGTQ
RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD
EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS
DILGDEDHLGDMDFKVAGTQSGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE
AISGARDDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA
TEGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIAEKRV
EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVEKPAEEAAAEAPAAKDE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaaaaaccagttgttaaaacgttccagtacggtaaccacacggttactctagaa
actggcgttattgcacgtcaagctacagcagcagttatggttacaatggacgatacagcc
gtattcgtttcagttgtaggtaagaaagaagccgttgctggtcaagacttcttccctcta
acagtaaactaccaagagcgtacttacgcggcaggtaaaatcccaggtggtttcttcaag
cgtgaaggtcgtccatctgaaggcgaaacgctaacagctcgtctaatcgaccgtccaatc
cgcccactattcccggattcattcaagaacgaagtgcaagttattgcgacggttgtgtct
gtaaacccagacgttcaaccagatatcccaaccatgattggtacttctgcggcactagct
atctctggtatcccattcaacggtcctatcggtgcagcacgtgttggtcacattgacggt
caacttgttcttaacccaagccaaacagagctagatgcatctcgtctggatcttgttgtt
gcaggtacagaatctgcggtactaatggttgagtcagaagctgacaacctaactgaagaa
gaaatgctagcggcggttgtttacggtcacgatcaacaacaagttgttatcaacgcaatc
aacgagttcaaagctgaagttgctactcctgcttgggattgggttgctcctgaagagaac
acagcacttaacaacaagattgctgaactagcagaagcgaagcttgttgaggcttaccaa
attactgagaagatggctcgttacgaccgtatccacgcgatcgcagcagaagttaacgaa
gtgctacttgctgaagatccagaagcggacacgaaagaaatccacactatcttccatgac
ctagagaagacagttgtacgtcgtagcatcatcgcgggtaacccacgtatcgatggtcgt
gagaaagatatggttcgtgcgctagacgtacgtactggtattcttccacgtactcatggt
agcgcgctattcactcgtggtgaaactcaggctatcgttacagcaactcttggtacgcag
cgtgacgcgcaaatcattgatgagctgacaggtgagcgtaaagatcacttcctactacac
tacaacttccctccatactgtgtaggtgaaactggttttgtaggttctccaaagcgtcgt
gaaatcggccacggtaaactggctaagcgtggtattgctgcagtaatgccatctgtagat
gagttcccatacacagttcgtgtagtatcagaaatcacagaatctaacggttcttcttca
atggcttctgtatgtggtacgtctctagcgcttatggatgcgggtgtgccaatcaaagcg
tctgttgcaggtatcgcaatgggtcttgtgaaagaaggcgacgacttcgtggttctttct
gacattctgggtgacgaagaccacctaggtgacatggactttaaagtagcaggtactcaa
tctggtatcactgcacttcaaatggacatcaagatcgaaggtatcactaaagagatcatg
caaattgcgcttaaccaagctcaaggcgcacgtaagcacatcctatctgtaatggatgaa
gctatctctggtgctcgtgatgatatctctgaatttgctcctcgtatccatacgatgaag
atcagtgctgagaagatcaaagacgttatcggtaaaggtggtgctgttatccgtgctcta
actgaagagactggtacaactatcgaaatcgaagacgacggcacaatcaagattgctgca
acggaaggtaccgctgcgaaagaagcgatccgccgtattgaagagatcactgctgaagtt
gaagtaggccgtatctacacgggtaaagtcgcacgtcttgctgactttggtgcatttgtt
actatccttccaggtaaagatggcctagtacacatttctcaaatcgcagaaaaacgtgtt
gagaaagtgtcagactacctaactgaaggtcaggaagttcaagttaaagttcttgaaatc
gaccgtcagggccgtgtacgtctaagcatgaaagaagcagtagaaaagccagctgaagaa
gcagcggctgaagcgcctgcagctaaagacgagtaa
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