Vibrio sp. STUT-A11: VspSTUT11_05990
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Entry
VspSTUT11_05990 CDS
T10419
Symbol
recB
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
vib Vibrio sp. STUT-A11
Pathway
vib03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VspSTUT11_05990 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vib03400
]
VspSTUT11_05990 (recB)
Enzymes [BR:
vib01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VspSTUT11_05990 (recB)
DNA repair and recombination proteins [BR:
vib03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VspSTUT11_05990 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
SLFN-g3_helicase
AAA_11
ResIII
AAA_12
Motif
Other DBs
NCBI-ProteinID:
BDR12623
LinkDB
All DBs
Position
1:735629..739312
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AA seq
1227 aa
AA seq
DB search
MDQMSGADLPNHALDKTEQPQPTPLEAMTFPLHGARLIEASAGTGKTFTIAGLYLRLLLG
HGSAETKHRVPLTVDQILVVTFTEAATAELRDRIRARIHDARIAFARGHSSDPVIQPLLS
EFDDHKQAADILLQAERQMDEAAVYTIHGFCQRMLTQNAFESGSRFNNEFVTDESHLKAQ
VVADYWRRNFYPLPFTLAGEVRQLWGSPSALLYDISNYLTGAPLSLSVPAMQGNLADLHT
ENLKKIDELKALWRDSQDDLLALISDSDINKRSYSKKSLPTWLEVVNAWAATETTGYDYP
DKLEKFAQNILLEKTPKGSAPQHAVFAAIETFLANPISLKAPLLAHAIEHCRVMLANAKN
QKQWLSFDDLLTQLSASIDSDESELLAERIRTLYPVAMIDEFQDTDPLQYSIFSRIYLNN
PECGLFMIGDPKQAIYGFRGADIFTYIKARNQVSAHYTLGTNWRSSADMVQAVNQVFALP
DSPFIYDSDIPFLPVNYSPNAEKRIWTMGGQKQPALTYWLQEADDKPLPKGEYLTRMAEA
TASQIQTILTQAQLGQACLVNGEKEKAVQAGDIAVLVRTGSEGRMIKQALADQGIASVYL
SNRDSVFTSSVAQDLQRLLQAVLTPENDRALRASLASELFALDAASLDALNNDETVWENA
VNEFKEYRKLWVQRGVLPMLRAVISKRHIAERLLEEGASSQGENGERVLTDLMHIGELLQ
QASNELDSDHGLLRWLAQSISDAENGLGGSDDQIQRLESERNLVQIVTIHKSKGLEYDLV
FLPFVFSYREASEAKYYDAANDRTVLDITGNDASMQQADKERLAEDLRLIYVALTRAVYA
CFIGASPLRNGRSTKEPTGVHRCAIGYLIQNGQEGGINDLHQGLAKQQDELDCVVLGGPP
KQLEEMYVAPQEKVCDLSAKELQNPIDRNWRITSYSGLVKQGSHHAEHDATIEITGFDID
SSDEQDEADLVEPERSIFTFPRGARPGTFLHSLFEEIEFTQPATTEENTQIILGLMESEQ
LDEEWLPILQQLIDTVLATPLDGKSLLLNQKAPSQRLVEMEFLLPIEVLSAPALNRVIQR
HDPLSAKAGDLGFQTVQGMLKGFIDLVFEHQGKYYVLDWKSNHLGDDVTHYHGEALKSAM
ADHRYDLQYQIYALALHRFLRSRLANYQYDQHFGGVYYLFLRGMDGQSDHGIFSAKPTLE
FLHEMDRLIDGQTLETRSTQAGQMELL
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaatgtcaggtgcagacttacctaaccatgcgttagataaaactgaacaacct
cagccaacgccactagaagcgatgacgttccctctacatggtgcgaggttaattgaggct
tcagcgggtacgggcaaaaccttcactattgcgggtttatacctgcgccttttgcttggc
catggtagtgcggagaccaagcatcgcgtcccgcttaccgtcgatcaaattctggtggtg
acctttaccgaagcggcaacagcggagttgcgcgatcgtattagggcgagaatccatgat
gcgcgtatcgcttttgctcgcggacacagctccgatccagtcatccagcctttgcttagt
gagttcgacgatcacaaacaagcggcagatattcttctccaggcagagcgtcaaatggat
gaggctgcggtctacaccattcatggtttctgccagcgcatgctgacacaaaatgctttt
gaatccggtagccgatttaataacgagtttgtgacagacgaaagccaccttaaagctcag
gtagtggctgactattggcgacgtaacttctacccattgccgtttactttggcgggagaa
gttcgtcagttgtgggggtctccatcagcactgttgtatgacatcagcaattacttaaca
ggcgcaccgttaagcctttctgtacctgcaatgcagggcaatttagctgatttgcatacg
gaaaatctgaaaaaaatagatgagctgaaagcattatggcgtgatagtcaggatgattta
ttagcgctgatttcggactccgacatcaacaaacgcagctacagcaaaaaatcgctaccg
acttggctggaggtggtgaacgcttgggccgccaccgaaaccacaggttacgattatccc
gacaaactggagaagtttgcgcaaaatattctcctggaaaaaacacctaaaggtagtgcg
ccgcagcacgctgtttttgcagcgattgaaacatttcttgccaatccaatcagcttaaaa
gcgccactgctggcccatgcgattgaacactgtcgcgtgatgttagccaatgcgaaaaat
caaaagcagtggctctctttcgatgacctgctgactcaactttctgcctctatcgatagc
gatgaaagcgagctattggcagagcgaattcgcactttgtatccggtcgcgatgattgat
gaattccaagataccgacccgttgcaatacagtatttttagtcgtatctatctgaacaac
ccagaatgcggtttgtttatgattggtgacccgaaacaggcgatatatggtttccgtggc
gcagacattttcacttatattaaagcgcgtaaccaagtcagtgctcactacacactaggc
actaactggcgttcaagtgctgatatggtacaagctgtgaaccaggtatttgccttgcca
gacagcccgtttatctatgattcggacattccgttcttgccggttaactacagcccaaat
gccgaaaaacgcatttggaccatgggtggtcaaaagcaacctgctttgacttactggttg
caagaagcagacgataagccgttgccgaaaggcgagtatttgactcgaatggcggaggca
accgcgagccaaatccaaacgattttgactcaggctcagctggggcaagcgtgtctggtg
aacggtgaaaaagagaaagccgttcaagctggcgatatcgcggtactggttcgtactggt
agcgaaggccgaatgattaaacaagcgttggctgatcaaggcattgccagtgtgtatctg
tctaaccgagacagcgtgtttaccagctcggttgctcaagatttacaacgccttctacaa
gcggtgttgactccggaaaatgacagggcgctacgtgccagtctcgcctctgaactgttt
gcgttggacgctgccagtctggatgcactgaataatgatgaaaccgtatgggaaaacgcg
gttaatgagttcaaagaatatcgcaaactttgggttcaacgtggggtattacccatgctg
cgagcggtgatcagcaagcggcatattgccgaacgattgttagaagaaggtgcaagctca
caaggagaaaatggtgagcgagtacttaccgatttaatgcacatcggtgaactcctgcaa
caagccagcaatgaactggacagcgaccacgggctgctgcgctggttggctcagtctatc
agtgatgcggaaaatggtttgggcggcagtgacgaccaaatccaacgtttggagtccgag
cgtaatttggtgcaaatcgtcactattcacaaatcaaaaggcttggaatatgaccttgtg
tttctgccatttgtgttcagctatcgagaagccagcgaagccaaatactacgacgccgcc
aatgatcgcactgttctggatataaccggtaacgacgcatcaatgcagcaagcggacaaa
gagcgtttagcggaagacttacgcttgatatacgtggcactaacgcgagctgtgtatgcg
tgttttattggtgcctcacctttgcgcaatggccgttcgaccaaagagccaaccggtgta
caccgctgtgcgattggctatttgattcaaaatggtcaagaaggtggcattaacgatttg
caccaaggtttagcaaagcaacaagacgagcttgattgtgtcgttttaggggggccgcct
aagcagcttgaagagatgtacgtcgcgccacaagaaaaggtgtgtgatcttagcgctaaa
gaactacaaaaccctatcgacagaaactggcgtatcacaagttattctggcttggtcaag
caaggctctcatcacgccgagcatgatgccacgattgagattacgggttttgatatcgac
tcatctgacgagcaagacgaagcggatttggtggagccagagcgttctatttttaccttc
cctcgtggtgcgcgtccggggacgttccttcacagcttattcgaggaaattgagtttact
cagccagccacgacggaagagaatacccaaatcattctcggtttgatggaaagtgagcag
ttggatgaagagtggttgcccattttacaacagctgattgatactgtgcttgccacgccg
ctagatggtaagtcattgctgcttaatcaaaaagcaccatcgcagcgtttggtggagatg
gagtttcttctgccaattgaagtgttgtccgctccggcgctgaaccgtgtgattcaacga
catgacccattgtctgccaaagcgggagatttaggtttccaaacggttcaaggcatgctc
aaaggctttatcgacttggtgtttgagcatcaaggcaagtactacgtgctggactggaaa
tcgaaccaccttggcgacgatgtgacgcattatcatggtgaggcactaaaatctgccatg
gcggatcaccgttacgatttgcagtatcagatttatgctttagcactgcatcgatttttg
cgcagtcggctggctaattatcaatacgatcagcattttggtggcgtgtattacttgttc
ttacgcggcatggatgggcaaagcgatcacggtattttttccgccaaaccaacgttagaa
tttttacatgagatggatcgtttgattgatggtcaaacactggaaacacgatcgactcag
gctgggcagatggagctactgtaa
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