Vibrio sp. STUT-A11: VspSTUT11_06640
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Entry
VspSTUT11_06640 CDS
T10419
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vib Vibrio sp. STUT-A11
Pathway
vib03030
DNA replication
vib03430
Mismatch repair
vib03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VspSTUT11_06640
03430 Mismatch repair
VspSTUT11_06640
03440 Homologous recombination
VspSTUT11_06640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vib03032
]
VspSTUT11_06640
03400 DNA repair and recombination proteins [BR:
vib03400
]
VspSTUT11_06640
Enzymes [BR:
vib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VspSTUT11_06640
DNA replication proteins [BR:
vib03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VspSTUT11_06640
DNA repair and recombination proteins [BR:
vib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VspSTUT11_06640
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
BDR12688
LinkDB
All DBs
Position
1:803206..806637
Genome browser
AA seq
1143 aa
AA seq
DB search
MVDGINKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGCGVKPIIGADFKMQSDE
FGEELTQLTVLAADNVGYKNLTLLISKAYLRGHIQHQPVIDKAWLAEMSEGLIVLSGGKS
GDIGKALLKGNRNLVQRCVEFYKQHFPDRYYLELLRTGRPDEETYLHFAVELAEQVDLPV
VATNEVVFLSADRFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEEMCELFADIPEA
LENSVEIAKRCNVTVRLNEYFLPAFPTEGMKETEFLVMKSREGLEERLEFLFPDEEERKK
RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKI
TDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTM
AAKAVIRDVGRVLGHPFGFVDRISKLIPPDPGMTLDKAFKAEPALPELYEADEEVKELID
MCHILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPVTQFDKNDVETAGLVKFDF
LGLRTLTIIDWALGLINPRLEREGKEPVRIESIPLDDQASFRLLQNSETTAVFQLESRGM
KELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAVSYPDEKWQHESLKEI
LDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRATFEEGAVKNGI
DGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKMHYPAEFMAAVMTADMDNTEK
VVGLVDECFRMKLTVLPPDINSGLYRFNVDENGAIVYGIGAIKGVGEGPIDAILEARNKG
GHFKDLFDFCARIDLKRVNKRVIEKLIYAGALDRLGPHRAAMMASLSDAVKAASQHHQAE
AFGQADMFGVLTDAPEEVEHKYIQVPAWPEKVWLEGERDTLGLYLTGHPINAYLKELNKY
TSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTRIGIMTLDDRSGRMEVMLFSDALDR
YAELLEKDRILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKYARGLSVSIDANQINDQF
FEQFSRILEPHKAGTVPVNVYYQRADARARLTLGTEWRVTPSDTLIDDLKQLLGTNQVEL
EFN
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atggtggatggtatcaacaaagttccaccgatcgttaaaaaagtcgcagagcttggcatg
cctgcgatggcattgaccgatttcactaacctgtgtggtttggtgaagttttatggcaca
gcgcatggctgcggtgttaaaccgatcatcggcgcagatttcaaaatgcaatctgatgag
ttcggtgaggagctgacacagctaacggtactggctgcagataacgtaggttacaaaaac
ctgacgctgctgatctccaaagcgtacctacgcggtcatatccagcatcagccagtgatt
gataaggcctggttggctgaaatgtcagaaggtttaatcgttctttctggtggtaaaagt
ggtgatatcggcaaagccttgcttaaaggtaaccggaatttagtacagcgttgtgtcgag
ttttacaaacagcactttccagaccgttattatctagaattgctgcgtactggtcgtccg
gatgaagaaacctatttgcacttcgcggtggaacttgcggagcaagttgatctgcccgtt
gtggcaaccaacgaggtggtctttctcagcgctgatcgttttgatgctcatgaaattcga
gtagcgattcatgacggttatacactagaagacccgcgccgaccaaaaaactacagccca
cagcagtatcttcgcactgaagaagaaatgtgtgagctgtttgcggatattcctgaagcg
ctagaaaacagtgtagagattgctaagcgctgtaacgtaactgtgcgtcttaatgaatac
ttcctgcccgccttcccaactgagggcatgaaagagaccgaattcctggtgatgaaatca
cgcgaaggtctggaagagcgtctggagttcctgttcccagatgaagaagaacgcaaaaag
cgtcgtccagaatacgatgagcgtttgcaaattgagttggatgttatcaaccagatgggc
ttcccaggatacttcctgatcgtaatggagttcatccagtggtcgaaagacaacgatatt
cctgtaggcccaggtcgtggttcgggtgcgggctctctggtggcatacgcactgaaaatc
actgaccttgatccactggaatacgatcttctgttcgaacgtttcttgaaccctgaacgt
gtatccatgcccgatttcgatgtcgacttctgtatggataaacgcgaccaggtcattgat
cacgtagctgaaatgtacggacgtgatgcggtatctcagatcattacctttggtaccatg
gcagccaaagcggtaatccgcgatgtggggcgtgttcttggtcatccgtttggttttgtc
gaccgaatctcgaagcttatcccaccagatcctggcatgacgctggataaagcattcaaa
gctgagccagcactacctgagctttatgaggcagatgaagaagttaaagaactcatcgac
atgtgccacatcttggaaggttgtacacgaaacgcgggtaagcacgcgggtggtgttgtt
atttcacccaccacgatcaccgacttcgcgccgatctatgcggatgcggaaggtcacttc
ccggttacccagtttgataagaacgacgtagaaactgctggtctggttaagttcgacttc
cttggtctgcgtacactaaccattattgactgggcgcttggtttgattaacccgcgttta
gagcgcgaaggtaaagagccggttcgcatagaatctatcccactcgacgatcaggcgtcg
ttccgtttgttacaaaactcagaaaccaccgccgtattccagttggaatcgcgtggtatg
aaagagttgatcaagcgacttcagccagactgtttcgaagacatcatcgcactagtagcg
ctcttccgtccgggtccactacagtcgggcatggtagataactttatcgaccgtaaacac
ggccgtgaagcggtctcttacccagatgaaaagtggcaacacgagtcactaaaagagata
ttagacccaacgtacggaatcatcctgtatcaggagcaggtaatgcagattgcgcaggtc
ttgtctggttacaccttgggtggcgccgacatgttgcgtcgtgcgatgggtaagaaaaag
ccggaagagatggccaaacaacgtgctactttcgaagaaggggcggtgaagaacggcatc
gacggcgagctggcgatgaaaatcttcgacttggtagaaaaattcgctggctacggcttt
aacaaatcgcactctgctgcatatgccttggtttcgtaccaaacgctatggctgaaaatg
cattatccagctgagtttatggctgcggtaatgaccgccgatatggataacactgaaaaa
gtggttggtctggtcgacgaatgtttccgtatgaagcttaccgtattgcctccggacatt
aactcagggttgtatcgctttaatgttgatgaaaacggcgctattgtttacggtatcggt
gcgatcaaaggtgttggtgaaggcccgattgatgcgatactggaagcgagaaacaaaggc
ggtcacttcaaagatttgtttgatttctgtgcgcgtatcgatctaaaacgtgttaacaag
cgtgtaattgaaaagctgatctacgccggtgcattagaccgacttggacctcatcgtgca
gctatgatggcgtcattgagtgatgcagtgaaagccgcgagtcagcaccatcaggcagaa
gcgtttggtcaggcggatatgttcggtgtattaaccgatgcgcctgaagaagtggagcat
aaatacattcaagttccagcttggcctgaaaaggtttggctggagggtgaacgcgacact
cttggcttatatttgactgggcaccccattaacgcgtatttaaaggaactaaataaatac
accagttgtcgactaaaagacgcaacgccaacacgtcgtgaccaatcagtgacggtagca
ggtttggtgatagctgctcgcgtgatgacgaccaagcgaggaacacgtattggtatcatg
acattagatgaccgaagtggtcgaatggaggtcatgctattttcagatgcgcttgatcgg
tatgctgaacttctcgaaaaagacagaattttggtcgtttcaggacaggtcagctttgat
gacttcaatggtggccttaaaatgtcggcgcgtgaagttatggatctcggcagcgcgcgt
gaaaaatacgctcgtggtctgtcggtatcgattgatgcaaatcagatcaatgatcaattc
tttgagcagttcagtcgtattttagaaccgcacaaagccggaaccgtacccgtcaatgta
tactaccagcgtgccgacgccagagcgcggttaacattgggcaccgagtggcgagtaacg
ccaagtgatacattaatagacgatttaaaacagttacttggaacaaaccaggtagaactt
gaatttaactaa
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