Vibrio sp. STUT-A11: VspSTUT11_20440
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Entry
VspSTUT11_20440 CDS
T10419
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vib Vibrio sp. STUT-A11
Pathway
vib03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VspSTUT11_20440 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vib03400
]
VspSTUT11_20440 (mfd)
Enzymes [BR:
vib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VspSTUT11_20440 (mfd)
DNA repair and recombination proteins [BR:
vib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VspSTUT11_20440 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
RecG_dom3_C
T1R_D3-like
Motif
Other DBs
NCBI-ProteinID:
BDR14068
LinkDB
All DBs
Position
1:2307744..2311205
Genome browser
AA seq
1153 aa
AA seq
DB search
MTKATILSVTNPSERGDKKQLGNLPGAALPLAIAELAKQHTSHSLLVVPDPQIALKLQAE
IEQFTDQPVSLFPDWETLPYDNFSPHQEIISDRIARLYQLPTQHNGITIVPVSTALQRQS
PRDFLLQHTLMVKTGDQFSLEKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGCDD
PYRIDFFDDEIDTIRTFDPENQRSIEDIQQIQLLPAHEFPTTKEAIEEFRTRWRTQFEAR
REPESIYMQVTKGTWPAGIEYWQPLFFEHTETLFDYLPEDSQLITYGDIEAAVETFLTDV
EYRYDQKKIDPLRPLLAPHDLWLKKDELFSHFKQLPQAQLHLDKIVQRGGRQNLAVQSLA
ELGVQQQNKEPLSRLRQFSEQFTGKIIFSVESEGRREALTELLQGIKVRPVVHQSFYQAL
ASKDRFSLILGANEHGFIHDEQNFALICESDLLGDRVIQRRRKDKKTVNSDTVIRHLAEL
KPGQPVVHIDHGIGRYIGLQTLEAGGMKTEYVTLEYQNEAKLYVPVSSLNLIGRYSGGAE
ESAPLHKLGGEAWAKARRKAAEKVRDVAAELLDVYAKRELKPGYKFALDRGQYATFKATF
PFEETDDQAMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVLVP
TTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKAILQDVAEGKVDIVVGTHKLLSSD
IRFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRLAIKTFVRQREESVVREAILREIMRGGQVYFLHNQVETIEKTAEDLQKLIPEAR
ITVAHGQMRERELERIMNDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGE
LLGDEQSGQIQSVGFTLYMEMLEQAVEALKEGKEPSLDELLREQTEVEMRIPALLPDDYI
PDVNTRLSMYKRIASVTNADELSELKVELIDRFGLLPDATKNLLAVSELKFAAGSLKAKK
IEAHDKGGFVEFYPDADINPAYLVKLLQSQPQKFAMEGPTKFKFSVPLTDRRKRIQFVKD
LLNDFKQNLLPTS
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagcaacaatactttccgtcaccaacccatctgagcgtggcgataaaaaacaa
ttaggtaatttacctggtgccgctctgccacttgcgattgcagaactggcgaaacagcat
acaagtcactcgctacttgttgtgcctgacccgcaaatcgccttaaaactgcaagccgaa
atagagcagttcacagaccaacctgtcagcctttttcctgactgggaaactctgccatac
gataacttttctccgcaccaggagattatttcggaccggattgcacgtttgtaccagtta
ccgacccaacacaacggcatcactattgtgcctgtcagtaccgcgttacagcgtcaatct
ccacgtgacttcttgctgcaacataccttgatggtaaaaactggcgatcaattttcactt
gaaaagctgcgcgttcagttagaaaactctggctatcgtcatgttgatcaagtatttggt
ccgggtgaatacgcaagccgcggctctattttggacctcttcccaatgggttgcgatgac
ccataccgtatcgatttttttgacgatgagatcgatacgatccgcacattcgatccagag
aaccagcgctcaattgaagacatccagcagattcagttgcttcccgctcatgagttcccg
accaccaaagaagcgattgaagagtttcgcacccgctggcgaacccaatttgaagcgcgt
cgtgagcctgaatcgatttacatgcaggtgaccaagggaacgtggccggcagggattgaa
tactggcaacccctgttctttgaacatacagagaccctgtttgattacttgccagaagac
tcgcaactgatcacttatggcgatattgaagccgccgtagaaacgttcttaactgacgtc
gagtaccgttacgatcagaaaaaaatcgatccattacgcccactgcttgctccgcacgat
ctgtggttgaagaaagatgaactcttcagccactttaaacagcttccgcaagctcagttg
catctggacaaaatcgtccagcgtggtggtcgtcagaacctggcggtgcagtcattagca
gaactcggcgttcagcaacagaataaagagccactttctcgcctgcgtcagtttagtgag
cagttcaccggtaaaatcatcttctcagtggaatcagaaggtcgacgtgaagcgctcaca
gaacttctacaaggcattaaagttcgccctgtcgttcaccaatccttctaccaggcgctc
gcttccaaagacaggtttagcttgattctgggtgccaatgaacatggctttattcatgat
gagcagaattttgcccttatctgcgaaagtgacctgcttggtgaccgcgttattcaacgc
cgtcgcaaagacaaaaaaaccgtcaacagcgacactgttattcgccaccttgccgagcta
aagccaggccagccagttgttcatatcgaccacggcatcggtcgctatatcggcctgcag
actctcgaagcaggaggtatgaagaccgaatacgtaacacttgagtatcaaaatgaagcc
aagttgtacgtaccggtttcctcgctgaacctgattggtcgttactctggtggtgcagaa
gagagtgcgcctttgcataaactcggcggcgaagcatgggctaaggctcgccgtaaagcc
gcagagaaagtgcgtgatgtggcagcagagttacttgatgtttacgccaaacgtgaactc
aaaccaggctataagtttgccctcgaccgcggccaatacgccactttcaaagcgacattc
ccattcgaagagaccgacgaccaggcaatggctatcaatgccgtgatgtccgatatgtgc
caagcgaaagccatggaccgcttagtttgtggtgatgttggttttggtaaaaccgaagtg
gcgatgagggcagcgtttgtcgcgacagacaacagcaaacaagtcgcggtgctggttcca
accaccctgcttgcccagcaacactttgaaaacttccgtgaccgttttgccaacttaccc
atccgtgtagaagtgctctcgcgctttaaatcggccaaagagcaaaaagcaattttacaa
gacgtcgcagaaggcaaagtcgatatcgtggttggcacacataaactgctgtcgagcgat
atccgtttcaaggatcttggtctgttaattgtcgatgaagaacaccgctttggtgtgcgt
caaaaagagaaagtgaaagcaatgcgtgcagatgtcgacattctgactctcaccgcaacg
ccgatccctcgaacgcttaatatggccatgagtggaatgcgcgatctatccatcattgcg
acgccgccagcacgtcgtctcgcaattaaaacctttgtgcgccagcgtgaagagtcggtg
gtacgtgaagctatactgcgtgagatcatgcgtggtggtcaggtctacttcctgcacaac
caggtcgaaaccatcgaaaaaaccgccgaagatctgcaaaagctgattccagaagcgcgt
ataaccgtcgcacatggccaaatgcgtgagcgcgagctagaacgcatcatgaacgacttc
tatcaccagcgctttaatgtccttgtgtgtactacgatcatcgagacaggcatcgatgtt
ccaaccgcgaataccattatcatggatcgcgcagataatcttggtttggctcagttgcac
cagttacgtggtcgtgttggtcgttctcaccaccaagcctatgcgtatttactgacgccg
catccaaaagcgatgaccaaagatgccatcaaacgtctcgatgccattgcttctctcgaa
gatcttggcgcaggctttacactcgccacccatgatttagagattcgcggcgccggtgaa
ctgcttggtgatgaacaaagtgggcaaattcaatcggttggctttacactgtatatggag
atgcttgaacaagcagttgaagcgctgaaggaagggaaagagccttcactcgatgagttg
ctgcgcgaacaaactgaagtggaaatgcgtattcctgcgctgttgccggatgattacatc
cctgatgtaaatactcgtctttccatgtataagcgaatcgcgagcgttaccaatgctgat
gaattgtcagaattaaaagtggaattgattgaccgctttggtcttttgcctgacgcgaca
aaaaacctgttggctgtctcagaactgaaatttgccgcaggtagtctgaaagcgaaaaag
attgaagcccatgataaaggcggatttgtcgagttttaccctgatgctgacataaatcca
gcgtatttggttaaactcctgcaatcacagccacaaaaatttgcgatggaaggtccaact
aagttcaagtttagcgtaccattaactgaccgacgcaaacgaattcagtttgttaaagac
ttactgaatgattttaaacagaatttattaccaacgagctaa
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