Vibrio sp. STUT-A11: VspSTUT11_24980
Help
Entry
VspSTUT11_24980 CDS
T10419
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K20919
sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
Organism
vib Vibrio sp. STUT-A11
Pathway
vib05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vib00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VspSTUT11_24980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vib03000
]
VspSTUT11_24980
Transcription factors [BR:
vib03000
]
Prokaryotic type
Helix-turn-helix
Other families
VspSTUT11_24980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VpsR
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_2
AAA_16
AAA_5
HTH_29
HTH_22
HTH_7
HTH_50
HTH_17
AAA
HTH_Tnp_1_2
TIP49
HTH_IclR
HTH_30
DUF134
HTH_23
RWP-RK
TrmB
Motif
Other DBs
NCBI-ProteinID:
BDR14522
LinkDB
All DBs
Position
1:complement(2830526..2831860)
Genome browser
AA seq
444 aa
AA seq
DB search
MAGQFKMDSIPGSLVVVGGTYEPWLSVLEQVGWKCHQVGDLRKANALLEDIGPCIGIVDL
SHDEFSLNGLANLVSSHKHVRWLAFIRESQLGADTICQFIVNFCIDFFTAPIPDAQLLST
IGHQLGMLKLEKKVWPSFGNCLDIGLIGESIPMKRLRDQVKRIGPTDVSILISGESGTGK
EAVARAIHKVSSRSHKPFMSINCRALNEQRFQAEVFGVAANRETGPSLLEQADGGTVLFN
DVLTISKQQQMNLLRFLQEGTVETPDGVKSVNVRILAANSSDVEKALINGDFNEELYHYI
NVLRISVPSLKERASDIALLARYYLQEFSKEYNSQAKSFSEDALKALMRYFWPGNVRELM
NQVKRAVLMSDSVVIDAHHLDLPQRNDSKRSLKSIRERSERDALLVVLESHSGQVSNAAK
ELGVSRATMYRLLNKHNLISDQPI
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggctgggcagtttaagatggattccattccggggtcgcttgtcgtcgtaggtggcacg
tatgagccttggttgtcagtgttggagcaagttggctggaagtgtcaccaggtgggtgat
ttacgtaaagccaatgcgttgctggaagatattggaccatgtattggtatcgtcgacctc
agccatgatgaattcagcttaaacggtttggctaacttggtaagttctcataaacatgtg
cgctggctagcgttcatcagagaatcgcagttgggggcagatactatctgccagtttatc
gtcaatttttgtatcgactttttcactgccccaattcctgatgcgcaactattaagcacc
atcggccaccaactgggtatgcttaaattagaaaagaaagtgtggccaagcttcggtaac
tgtctggatataggcttgataggtgaatctattccaatgaaacgtctgcgtgatcaggtg
aaacgtatcggtccaaccgacgtcagtattcttatttctggagaaagcggtacgggaaaa
gaagcggttgcccgagcgattcacaaggtatcttcccgctctcacaagccgtttatgtcg
attaattgccgagctttgaatgagcagaggttccaggctgaagtgtttggcgttgcagcg
aaccgcgagacgggtccaagcttattggaacaggctgatggcggtactgtgctctttaat
gacgttcttaccatctcgaaacagcaacaaatgaacttgttgagatttttacaggaaggc
acagtagaaacccctgatggagtgaaaagtgtcaacgttcgtattcttgcggcgaactct
tctgatgtagaaaaagcactgatcaacggcgacttcaacgaagagctttatcattacatc
aacgtgttacgaattagcgttcctagcctgaaagagcgtgccagtgacattgcgctactg
gcacgctattacttgcaagagttttcaaaggagtacaactcacaagcaaaaagcttctcg
gaagatgcattaaaagcactgatgcgttacttctggccgggcaatgtacgcgagctgatg
aatcaggtgaaacgtgcagtattaatgtcagacagtgttgtgattgacgcgcatcattta
gatttgcctcaacgaaatgactccaagcgtagcttgaaatcgattcgtgagagaagcgaa
cgcgatgcattgcttgtcgtcttggaatcgcattcaggtcaagtttctaatgccgctaag
gagttaggtgtttcgcgcgcaaccatgtaccgtcttctcaacaaacataatttaatttcg
gaccaacctatttag
DBGET
integrated database retrieval system
