Vibrio sp. STUT-A11: VspSTUT11_28090
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Entry
VspSTUT11_28090 CDS
T10419
Symbol
rpoZ
Name
(GenBank) DNA-directed RNA polymerase subunit omega
KO
K03060
DNA-directed RNA polymerase subunit omega [EC:
2.7.7.6
]
Organism
vib Vibrio sp. STUT-A11
Pathway
vib03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vib00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VspSTUT11_28090 (rpoZ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vib03021
]
VspSTUT11_28090 (rpoZ)
03400 DNA repair and recombination proteins [BR:
vib03400
]
VspSTUT11_28090 (rpoZ)
Enzymes [BR:
vib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VspSTUT11_28090 (rpoZ)
Transcription machinery [BR:
vib03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VspSTUT11_28090 (rpoZ)
DNA repair and recombination proteins [BR:
vib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VspSTUT11_28090 (rpoZ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb6
AmiR_N
DUF1599
Motif
Other DBs
NCBI-ProteinID:
BDR14833
LinkDB
All DBs
Position
1:3178233..3178505
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AA seq
90 aa
AA seq
DB search
MARVTVQDAVEKVGNRFDLVLIAARRARQMQTGGKDALVPEENDKPTVIALREIEEGLIT
KEVLDARERQEQQEQEAAELAAVSSIAHNR
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
atggcacgcgtaactgttcaagacgctgttgaaaaagttggcaaccgtttcgacctagta
ctgattgcggctcgccgcgctcgtcaaatgcaaactggcggtaaagatgcactagtgcca
gaagagaacgataagccaacggttatcgcgcttcgcgaaatcgaagaaggtttaatcacg
aaagaagttctggacgctcgtgaacgtcaagaacaacaagagcaagaagcggcagagcta
gcggcagtaagcagcatcgctcacaaccgttaa
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