Vibrio sp. STUT-A11: VspSTUT11_43380
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Entry
VspSTUT11_43380 CDS
T10419
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vib Vibrio sp. STUT-A11
Pathway
vib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VspSTUT11_43380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vib03019
]
VspSTUT11_43380
Enzymes [BR:
vib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VspSTUT11_43380
Messenger RNA biogenesis [BR:
vib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VspSTUT11_43380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
P-loop_SecA
AAA_19
Helicase_RecD
Helicase_C_2
ERCC3_RAD25_C
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
BDR16362
LinkDB
All DBs
Position
2:complement(1528003..1529253)
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AA seq
416 aa
AA seq
DB search
MSVNFADLGIEQNLVETLSRLNIVIPTPVQEKSIPHVLEGKNLLAAAQTGTGKTAAFGLP
IIQSVQQEKLNGTPKALILVPTRELAQQVFESLSQYASQTALNIVCVYGGTSIGVQKKKL
EEGADILIATPGRLLDHLFNGNVNISKTSTLVLDEADRMLDMGFWPDLQRILRRMPEDKQ
TMLFSATFEKRIKTIAYKLMDSPVEIEVTPPNTTAETVKQMVYPVDKKRKRELLAYLIGS
KNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIAT
DVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGNSGLAVSLMSRDEEYLLHAIEN
LLDQRLPQEWLAGFEPSLIEEVEPERNGGGRKSRSAEKRKLKAKLAIHKNRGKNRR
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgtccgttaattttgctgaccttggcattgaacaaaacctggtggaaacgctgagcagg
ttaaatatcgtgatcccgacaccggtgcaagaaaagtcgattccccatgtattggaaggg
aaaaacctgctcgctgccgcgcagacgggtacgggtaaaacggctgcgtttggcttgccg
attattcaaagcgtacagcaagaaaaacttaacggaacgccaaaagctctgattctggtg
cctacgcgtgaattagcgcaacaagtcttcgaaagcctgtcccagtacgcgtcacaaacg
gcattaaacattgtctgtgtttatggtggtaccagtattggtgtgcagaagaaaaaactg
gaggaaggtgcagatattctgatcgcaaccccaggacgcctgttggaccatctgtttaac
ggcaatgtaaacatttcaaagacgagtacgcttgtgctcgatgaagccgaccgtatgctg
gacatgggcttttggcctgatctacaacgaatcttacgtcgcatgccggaagataaacag
accatgctattttccgcgacttttgaaaagcggattaaaaccattgcttataagctgatg
gattctccggttgagatcgaagttactccgccaaatacgaccgcagaaacggttaaacag
atggtttatcccgtcgataaaaaacgtaagcgtgagttgctcgcctacttaattggttcg
aaaaactggcaacaagtgctggtgtttaccaaaaccaaacagggtagtgatgaacttgcg
aaagaattaaagcttgatggcattaaagcggtgtcgattaatggcgataagtcgcaaggc
gcacgtcaacgagcgttagatgaattcaaacaaggtaaagtgcgtgccttgattgcgact
gacgttgcagcccgagggttggatattcaggagcttgagcaagtggttaactttgacatg
ccatttaaagcagaagattacgtacaccggatcgggcggacaggacgtgcaggtaactct
ggacttgctgtatccttaatgagccgagacgaagagtatttactgcatgcgattgagaac
ttactcgatcagcgcttgcctcaagaatggttagcgggcttcgagccaagcctaattgaa
gaggttgagcctgagcgtaacggtggtggtcgtaagagccgctcggcagaaaaacgcaaa
ctaaaagccaagttagccatccacaaaaatcgtggtaaaaaccgccgttaa
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