Vibrio sp. STUT-A11: VspSTUT11_44850
Help
Entry
VspSTUT11_44850 CDS
T10419
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vib Vibrio sp. STUT-A11
Pathway
vib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VspSTUT11_44850 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vib03019
]
VspSTUT11_44850 (deaD)
03009 Ribosome biogenesis [BR:
vib03009
]
VspSTUT11_44850 (deaD)
Enzymes [BR:
vib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VspSTUT11_44850 (deaD)
Messenger RNA biogenesis [BR:
vib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VspSTUT11_44850 (deaD)
Ribosome biogenesis [BR:
vib03009
]
Prokaryotic type
rRNA helicases
VspSTUT11_44850 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Flavi_DEAD
WSD
Motif
Other DBs
NCBI-ProteinID:
BDR16509
LinkDB
All DBs
Position
2:complement(1706355..1708262)
Genome browser
AA seq
635 aa
AA seq
DB search
MQDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAF
SLPLLNKLDLNQRKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMR
ALKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPES
AQRVLFSATMPPMLKKIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSSMEEIQLPLRDQVAEARLAQLGAELEAEKKHKSLDKFAELVEKLQTSLEIDPAM
LAAMLLKRQQGKRPLFYIGEDPMVEAIERDKQRRKERREGGREGGRNFNNQDWDTYQLQV
GREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQLPKAMTSEAANKLSKLRIRQQ
DVGAVVCDFDDFRESRGGRRDGGRRDGGRRDGGYRGNRDGGARREGGRRDGGFRGNRDGN
REGGERRFDRNRGGDHRGNYRGERGHGRGRSTQDA
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgcaagattctgttattcaattcagtgatttatctctgaatgattctatcctttctgct
ctagacggaatgggtttcgtgtcaccaactccaattcaggctgcggcaatcccacacctg
ttggaaggtgctgacgcgctgggcaaggcacaaacgggtacaggtaaaacggcagcattc
tctctgcctcttctcaacaaactagatctaaaccaacgcaaaccacaagcaattgtactt
gctccgactcgtgagctagcgattcaggttgcagcggaaatgaaaaaccttggtaaaaac
atcaagggcttgaaagttctagaaatctacggtggtgcttctatcgttgatcaaatgcgt
gcacttaaaaatggtgcgcacgttgttgttggtactcctggccgtgttcaagacctgatc
aaccgtgaacgtctacatctagacgaagtgaatactttcgtacttgatgaagcggacgaa
atgctaaacatgggtttcgtagacgacgtaactgcaatcatggagcacgctcctgaatca
gcacaacgcgttctgttctctgcgactatgcctccaatgctgaaaaagattgtcgagcgc
ttccttcgtgaccctgtaacggtagacgttgctggtaagaaccacactgtagacaaagtt
caacaacagttctgggtagtgaagggcgtagagaaagatgaagcgatgtctcgtcttctt
gaaactgaagaaacggatgcgtcaatcgtattcgtacgtactcgtcaagatactgagcgt
ttagctgactggctttcagctcgtggcttcaaagctgcggcactgcacggtgatatccct
cagtctctacgtgagcgtactgttgaccacatcaaacagggtgttatcgacatcctagtt
gcaactgacgttgttgcacgtggccttgacgttccgcgtattacgcacgtatttaactac
gacatcccatttgatgttgagtcttacatccaccgtatcggccgtacaggtcgtgctgga
cgtaaaggtaaagcgatccttcttgttcgcactaaccaaatccgcatgttgcgtactatc
gagcgtgtcactaagtcatcaatggaagaaatccaacttcctctacgtgaccaggttgct
gaagctcgtctggctcaactaggtgcagagctagaagctgagaaaaagcacaaatcacta
gataagtttgctgagttggttgagaaactacaaacttctctggaaatcgaccctgcaatg
cttgctgcgatgcttcttaagcgtcagcaaggcaaacgcccactattctacattggtgaa
gacccaatggtagaagcgattgagcgtgataagcaacgtcgtaaagagcgtcgtgaaggt
ggccgcgaaggtggtcgtaacttcaacaaccaagattgggatacttaccagctacaagtt
ggccgcgagcaaggtgttcaagttaaagacatcgttggtgctttggcaaacgaacttggc
ctgggtaaaggttctatcggtgcgatcaagctagcgcaaggtcacacgttcgtacagcta
ccaaaagcaatgacttctgaagcggcgaacaagctaagcaaactgcgtatccgtcaacaa
gatgttggtgcggtagtctgtgacttcgatgatttccgtgaatctcgtggtggtcgtcgt
gacggcggtcgtcgcgatggtggacgtcgtgatggtggctaccgtggtaaccgtgacggt
ggtgctcgtcgtgaaggtggccgtcgtgatggtggtttccgtggcaaccgcgatggcaac
cgagaaggtggtgagcgtcgtttcgaccgtaaccgtggtggtgaccaccgtggtaactac
cgtggcgaacgtggtcacggccgtggtcgtagtacacaagacgcataa
DBGET
integrated database retrieval system
