Vibrio sp. BS-M-Sm-2: ACJ3Y0_08930
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Entry
ACJ3Y0_08930 CDS
T11939
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vibr Vibrio sp. BS-M-Sm-2
Pathway
vibr03420
Nucleotide excision repair
vibr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vibr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACJ3Y0_08930 (uvrD)
03430 Mismatch repair
ACJ3Y0_08930 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vibr03400
]
ACJ3Y0_08930 (uvrD)
Enzymes [BR:
vibr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACJ3Y0_08930 (uvrD)
DNA repair and recombination proteins [BR:
vibr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACJ3Y0_08930 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
ACJ3Y0_08930 (uvrD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
PhoH
Motif
Other DBs
NCBI-ProteinID:
XLW34775
LinkDB
All DBs
Position
1:1973658..1975832
Genome browser
AA seq
724 aa
AA seq
DB search
MIDPSLLLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLQSVEQASPFSIMS
VTFTNKAAAEMRGRIEELMMGSSSGMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQ
IRLLRRLIKAQNLDEKQWPAKQASWWINGKKDEGLRPSHIDAYHDPITQTWLKIYSAYQE
ACDRAGLVDFAEILLRSHELLRDKKHIREHYQARFKHILVDEFQDTNNIQYAWLRMMAGP
DCRVMIVGDDDQSIYGWRGAKIENIQKFLDEFPGASTVRLEQNYRSTKTILQASNELISN
NTERMGKELWTDGNDGEPISVYSAYNELDEARFTVSKIKEWQEKGGALEDTAMLYRNNAQ
SRVLEEALIQGGLPYRIYGGMRFFERQEIRDALSYMRLMSNRSNDAAFERVVNTPTRGLG
DKTLETIRLAARDRGATMWEASVALIEEQVLPGRAAGALSRFIELINALEDDTLELSLHE
QTDHVIKSSGLFAMYEQEKGEKSKARIENLEELVTATRQFEKPEEADEMSMLTAFLTHAA
LEAGEGQADEFDDAVQLMTLHSAKGLEFPIVFMVGVEEGMFPSQMSAEEAGRLEEERRLC
YVGMTRAMEKLYITYAEMRRLYGQDKYHKPSRFIRELPETCLDEVRMKAQVSRPASSGRF
SQTAVKENFNETGFSLGSRVKHPKFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAYAR
LEQL
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgatagatccttcgcttttactcgatggcctaaacgataaacaacgtgaggcggtcgca
gcacctttagaaaacctacttattctggcaggtgctggcagtggtaaaacgcgagtgttg
gtgcatcgcatcgcttggctgcaaagcgtagagcaagcatcgccgttctctatcatgtcg
gttaccttcaccaacaaagcggcagcagagatgcgtggtcgtattgaagagttgatgatg
ggcagctcgtcaggtatgtggaacggcaccttccacggtatctgtcatcgtattcttcgt
gctcactacctcgatgcaaaactgccagaagacttccagatcattgactcagatgatcag
attcgcttactacgtcgcttaatcaaggcgcaaaaccttgatgaaaagcagtggccagcc
aagcaagcttcttggtggatcaatggcaagaaagacgaagggctgcgcccaagtcacatt
gacgcctaccatgatccaataactcaaacgtggttaaagatttactctgcttaccaagag
gcatgtgatcgtgctggcttggtcgactttgctgagatcttgttgagatcgcatgaacta
ttgcgcgataagaaacacatccgcgagcattaccaagctcgtttcaagcacattcttgtc
gacgaatttcaagataccaacaacatccaatacgcttggttacgtatgatggcaggcccg
gattgccgtgtgatgatcgtgggtgatgatgaccaatctatctatggctggcgtggtgcg
aagatcgaaaatattcagaagttcttggatgaattcccaggagcttcgacggttcgactc
gaacaaaactaccgttcaaccaaaaccattctacaggcgtcgaacgagcttatctcgaac
aacactgaacgtatgggtaaagagctgtggaccgatggtaacgatggcgagccaatctct
gtgtactcagcatacaacgagctcgatgaagcgcgtttcacggtcagcaaaatcaaagag
tggcaggagaaaggcggcgcgctagaagatacggcaatgctttatcgtaataacgcccaa
tcgcgtgttcttgaagaagcgttgattcaaggtggtctgccttaccgaatctacggcggc
atgcgattcttcgagcgtcaagaaatcagagatgctttgagctacatgcgcctaatgagt
aatcgcagtaatgatgctgcgtttgagcgtgtcgtcaatacgccaacgcgtggcttgggt
gataaaacgttagaaacgattcgtcttgcagctcgtgatcgtggtgcaaccatgtgggaa
gcaagtgttgctttgatagaagaacaagtgctccccggtcgtgctgcgggtgcattgagt
cgctttatcgagcttattaatgcgcttgaagatgatacgctagaacttagcctgcatgaa
caaaccgaccatgtgattaagtcgtcgggtctatttgcgatgtacgagcaagagaaaggc
gagaaatcgaaagcgcgtattgagaacttggaagaattggtaactgcaactcgtcagttc
gagaagccagaagaagcagatgaaatgagcatgctaacggcattcttgactcatgcagct
ttggaagcgggtgaaggtcaggctgatgagtttgatgatgcggttcagttaatgaccctg
cacagtgccaaaggcctagagttcccaatagtattcatggttggcgttgaagaaggcatg
ttcccaagccagatgtctgcagaagaagcggggcgtttagaagaagaacgtcgcttgtgc
tatgtaggcatgacccgtgcgatggagaagctttatatcacttacgctgagatgcgtcgc
ttgtacggtcaggacaagtaccacaaaccatcacgctttattcgtgagctgccagaaacc
tgtttggatgaagttcgtatgaaagcgcaagtgagccgtccagcaagcagtggccgcttt
agccaaaccgccgtgaaagagaactttaacgaaacagggtttagtttgggttctcgcgtt
aagcaccctaagtttggtgaaggcactatcatcaacttcgagggaagtggcccgcagagc
cgagttcaagtcgcgtttaacggtgaaggcatcaagtggttagtaacggcttatgctcgt
ttagaacagttgtaa
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