Vibrio iocasae: SNR28_05310
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Entry
SNR28_05310 CDS
T11169
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vic Vibrio iocasae
Pathway
vic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SNR28_05310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vic03019
]
SNR28_05310
03009 Ribosome biogenesis [BR:
vic03009
]
SNR28_05310
Enzymes [BR:
vic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SNR28_05310
Messenger RNA biogenesis [BR:
vic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SNR28_05310
Ribosome biogenesis [BR:
vic03009
]
Prokaryotic type
rRNA helicases
SNR28_05310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
XHF81611
LinkDB
All DBs
Position
1:complement(1175423..1177300)
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AA seq
625 aa
AA seq
DB search
MQDSEIQFSQLALNDALLSALNEMGFVSPTPIQAAAIPFLLEGKDALGKAQTGTGKTAAF
SLPILNALDIKQYKPQAIILAPTRELAIQVAAEIKNLGRNIKGLKVLEIYGGASIVDQMR
ALKSGAHIIVGTPGRVEDLIKRDRLHLDEVKTFVLDEADEMLNMGFVDDVTWIMEHAPES
AQRVLFSATMPPMLKTIVDRFLREPARIDVAGSNHTVEKVEQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKKGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSSMEEIQLPLRDKVAQARLEKLGTELELEKEHTSLENFAELVEKLQESLEIDTTT
LAAMLLKRTQGKRPLFYKGPDPMVAAIERDKQRRKERREGGRDGRRGEGRSFGGNQDWDT
YQLQVGREQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMNSETAGKLRKL
RIRQKEAGAVVVDYDDFRERGGRRDGGRRDGGRREGGYRGNRDGNRDGNRNHRGGERRFD
RNRGGDNRGSYRGERSGGRGRRDEA
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgcaagattccgaaattcaattcagccaattagcgctgaatgacgcccttttgtctgca
cttaacgaaatgggttttgtttcccctacacctattcaggctgcagcgattcctttcctt
ctggaaggtaaagacgctctgggtaaagctcaaacaggtacaggtaaaacagcggcattc
tctcttccgatacttaacgctcttgatatcaaacaatacaagccacaggcgattatcctt
gcgccaactcgtgagcttgcgattcaggttgcagcggaaatcaaaaaccttggtcgtaac
atcaagggactaaaagttttagaaatctatggtggtgcatctatcgtagatcagatgcgt
gctcttaaatctggtgcgcacattattgttggtactccaggccgtgtagaagaccttatt
aagcgtgatcgtctgcatcttgatgaagtaaaaaccttcgtactggatgaagctgacgaa
atgctgaacatgggctttgttgacgacgtaacttggattatggagcacgctcctgagtca
gcacaacgcgttctgttttctgcaactatgcctccaatgcttaaaactatcgttgatcgc
ttcctacgtgaaccagcacgtatcgatgttgcgggcagcaaccacacggtagaaaaagta
gaacagcagttctgggtagtgaaaggtgtagaaaaagacgaggcgatgtcacgtcttttg
gaaactgaagagactgatgcttctatcgtattcgtaagaacacgtcaggatactgagcgt
ctggcagactggctttcagctcgcggttttaaagcggctgcacttcacggtgatattcca
cagtctctgcgtgaaagaaccgttgatcacatcaaaaaaggtgttatcgatattctggtt
gcgactgacgtggttgcacgtggtcttgatgtgccgcgtattactcacgtatttaactac
gatattccttttgatgttgaatcatacattcaccgtattggacgtactggtcgtgctgga
cgtaaaggtaaagcgatccttcttgttcgcactaaccagatccgcatgcttcgcacaatt
gagcgtgttactaaatcaagcatggaagagatccaacttcctctacgcgacaaagtagca
caggctcgtcttgagaagcttggtactgaacttgagctagagaaagaacacacttcacta
gagaactttgctgagctagtagaaaagcttcaggagtctctggagatcgatacaacaact
ttagcggcaatgctgctaaaacgtactcaaggcaagcgtcctttgttctacaaaggtcca
gacccgatggttgcagctatcgagcgcgataagcaacgtcgtaaagagcgtcgtgaaggt
ggacgtgacggacgccgtggcgaaggccgttcatttggtggtaaccaggattgggatact
taccaactacaagttggtcgtgagcaaggtgttcaggttaaagatattgttggtgcactt
gcaaatgagcttggtttgaccaaaggctctatcggtgcaatcaaactggcacaaggtcat
acgtttgtgcagctaccaaaagctatgaactctgaaactgcgggtaaacttcgcaagtta
cgtattcgccagaaagaagcgggtgcagtagttgtagattatgatgacttccgtgaaaga
ggcggtcgtcgtgacggaggtcgcagagatggtggtcgtcgtgaaggtggatatcgtgga
aaccgcgatggtaaccgagacggaaaccgtaaccaccgtggtggtgagcgtcgtttcgac
agaaaccgtggtggtgacaacagaggtagctaccgtggtgaacgttctggcggtcgtggc
cgacgcgacgaagcgtaa
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