Vibrio iocasae: SNR28_08165
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Entry
SNR28_08165 CDS
T11169
Name
(GenBank) LuxR C-terminal-related transcriptional regulator
KO
K20918
LuxR family transcriptional regulator, positive regulator of biofilm formation
Organism
vic Vibrio iocasae
Pathway
vic05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vic00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
SNR28_08165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vic03000
]
SNR28_08165
Transcription factors [BR:
vic03000
]
Prokaryotic type
Helix-turn-helix
LuxR family
SNR28_08165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VpsT-like_REC
GerE
Sigma70_r4_2
Sigma70_r4
HTH_23
HTH_7
HTH_30
ACT_phage
HTH_40
HTH_11
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-ProteinID:
XHF82157
LinkDB
All DBs
Position
1:complement(1829504..1830166)
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AA seq
220 aa
AA seq
DB search
MMDHNDIREIAIITESSMQSSMLKDTLEEKLDVHISLFSVNHLSDEMATHRDIIADTVIV
DLSHFSQEKREIYHTCRNLYFNHAAEVLINCPDDTNISQLMAWSNLNGVFYVSDDIDMLI
QGVDKILQGELWFSRKLAQEYIMFYRQKNKVKPSPGLNKLTKREQQIITLLGNGDSNTQI
ADKLFVSENTVKTHLHNVFKKINARNRLQALIWVKENIIE
NT seq
663 nt
NT seq
+upstream
nt +downstream
nt
atgatggatcacaatgacattcgcgaaatagcgatcattacagaaagcagcatgcagagt
tcaatgttgaaagatacattggaagagaaactggatgttcatatcagtcttttttctgta
aatcatttgtctgatgagatggctactcatagagacattattgctgataccgttatcgtc
gatttaagccacttctctcaagagaagagagaaatctaccatacctgtcgtaacctctat
ttcaatcacgctgcagaagtgctgattaactgtcctgacgacactaatattagccaatta
atggcctggtctaatttgaatggcgtattttatgtttccgatgatatcgatatgctgatt
cagggcgttgataaaatccttcagggtgagctctggtttagccgtaaactggcgcaagag
tatattatgttctatcgccagaagaacaaggtgaagccgtctccagggctaaataagcta
accaagcgagagcaacaaatcatcactttacttggcaatggcgattcaaatacccagata
gcagacaagctgttcgttagcgaaaataccgtaaaaactcaccttcataacgtcttcaaa
aaaataaacgccagaaatcgtcttcaggctctgatctgggtaaaagagaatattatcgaa
tag
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