Vibrio iocasae: SNR28_09380
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Entry
SNR28_09380 CDS
T11169
Name
(GenBank) exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
vic Vibrio iocasae
Pathway
vic03030
DNA replication
vic03430
Mismatch repair
vic03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SNR28_09380
03430 Mismatch repair
SNR28_09380
03440 Homologous recombination
SNR28_09380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vic03032
]
SNR28_09380
03400 DNA repair and recombination proteins [BR:
vic03400
]
SNR28_09380
Enzymes [BR:
vic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SNR28_09380
DNA replication proteins [BR:
vic03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SNR28_09380
DNA repair and recombination proteins [BR:
vic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SNR28_09380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
XHF82391
LinkDB
All DBs
Position
1:2121763..2122479
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AA seq
238 aa
AA seq
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MIKYFHPLSRLLRQQNKFLSRDLPDAIRQCLNTPVIEKTTVMESLSFLVLDIETTGLDAD
RDQILSIGWVEVNNLLVDLSTCKHFYIRGATGINSESAVINHITPEQLESGISLDEAFSM
LLQDMQGKIMVAHGSMIEKSFLERFVRDKYALSSLPIVWVDTLSLEKNFAHFRGAEASAD
FRLSSVREQYGLPEYATHDALTDAVSCAELLLAQVERYFAQDARFFYSLYPLTQNRHQ
NT seq
717 nt
NT seq
+upstream
nt +downstream
nt
atgattaagtactttcatccattatctaggcttttaaggcagcagaacaagtttttgtca
cgggatcttcctgacgctatcagacaatgcctgaacactccggttattgagaaaacgact
gtgatggagtctctttcttttcttgtattggatattgaaacgacggggctggatgctgac
agagaccaaattctgagtattggatgggttgaagtaaataatctgcttgtcgatctttct
acgtgtaagcacttttatattcgtggcgctactggaataaacagtgaatctgctgttatc
aaccacatcacaccagaacaattggaatcgggtatctcattagatgaggctttttcaatg
ctgctgcaagatatgcagggaaaaatcatggttgcccatggcagtatgattgagaagtcg
tttttagagcgatttgttcgggataaatacgcgctttcttcattgcctatagtttgggtc
gatactctctctcttgaaaagaattttgctcattttcgtggggcagaagcatctgcagac
tttcgattgagttcagtaagagagcagtatggactgcccgagtatgcgactcatgatgcc
ttaaccgatgcggtgtcttgtgctgagttacttttggctcaggttgaacgctattttgct
caggatgccaggttcttctactctctctatcctctaacgcaaaaccgacatcaatag
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