Vibrio iocasae: SNR28_09840
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Entry
SNR28_09840 CDS
T11169
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
vic Vibrio iocasae
Pathway
vic03030
DNA replication
vic03410
Base excision repair
vic03420
Nucleotide excision repair
vic03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SNR28_09840 (polA)
03410 Base excision repair
SNR28_09840 (polA)
03420 Nucleotide excision repair
SNR28_09840 (polA)
03440 Homologous recombination
SNR28_09840 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vic03032
]
SNR28_09840 (polA)
03400 DNA repair and recombination proteins [BR:
vic03400
]
SNR28_09840 (polA)
Enzymes [BR:
vic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SNR28_09840 (polA)
DNA replication proteins [BR:
vic03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SNR28_09840 (polA)
DNA repair and recombination proteins [BR:
vic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
SNR28_09840 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SNR28_09840 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
XHF85040
LinkDB
All DBs
Position
2:78019..80799
Genome browser
AA seq
926 aa
AA seq
DB search
MASIPENPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFPSDKIAV
IFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIKAMGLPLISIPGVEADDVIGT
LASQASKAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYL
ALMGDKVDNIPGVPGVGDKTATALLQGIGGLDKLYEQLDDIAALGFRGSKTMSKKLIDNK
ENAYLSYELATIKLDVELEETIESLVKAEPSKDELIQLYGKLTFKSWLNELLDGGSGAVE
ADDKSGRAPATASTIDSSAVTIDRSKYETILDKESFANWLDKLKAAEVFAFDTETDSLDY
MVANLVGLSFAVEEGVAAYVPVAHDYLDAPEQLDRDWVLEQLKPILEDESQAKVGQNLKY
DASVLARYDIEMKGIRHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFESIAGKGKNQ
LTFNQIDLEQAASYAAEDADVTLRLHNRLVENIEQDDKLKSVYEEIEVPLVPVLSRMERT
GVFIDDMLLGAQSQEIAVRLEQLEKEAYEIAGEEFNLSSPKQLQAILFEKMGLPVVKKTP
SGAPSTNEEVLQELALDYPLPKRILEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAV
TATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPHGWKILAVDYSQIELRIMAHLSGDQAL
LDAFKHGKDIHAATAAEVLGIEIDQVSSEQRRRAKAINFGLIYGMSAFGLAKQLGIPRGE
AQGYMDTYFERYPGVMQYMEDTRAQASEQGFVETLFGRRLHLPEIKSRNGMRRKAAERAA
INAPMQGTAADIIKKAMLLVDEWIQKEGNDRVRLLMQVHDELVFEVEESALAEIESKVQN
LMESAASINVPLVAEAGHGDNWDQAH
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcatccctgaaaacccacttatccttatagatggctcctcctatctttatcga
gcttttcacgcctatccgggcacaatgagcaacggtgagatacctacgaatgctgtttac
ggtgttgtaaatatgctgagaagtatgatgaggcagttcccatcagataagattgccgtt
atttttgatgcgaaaggtaaaactttcagggatgacatgtacccagagtacaaggcaaat
cgcccaccaatgccagatgatcttcggtgtcagattgagcctctgcacaatgtaattaaa
gcgatgggcttacctcttatttcaattcctggagttgaagcggacgatgttattggtaca
ttggcctctcaagcttcgaaggctggcatgcctgtcttaatcagtactggcgataaggat
atggctcagttggttgatgacaacgttactctaattaacaccatgacgaatgtagtgatg
gatcgtgaaggggttattgagaagttcggtataccaccggagcttattatcgattatctg
gccctgatgggagataaggtcgataacatcccaggtgttccaggggtgggagacaagact
gcgacagccttgctacaaggtattggcggcctcgataagctatatgagcagctggatgat
attgctgctttgggcttccgtggttcaaaaacaatgtcgaagaagctaatagacaacaaa
gagaatgcgtacctttcttacgagttagcaaccatcaagttggatgttgagttagaagaa
accatagaatctctggttaaagcggaaccaagcaaagatgagcttattcagctttacgga
aagctaacttttaagtcgtggttaaatgagcttttggatggtggttctggtgctgttgaa
gcagatgataaatctggccgagctccggctactgcctcaacaatagactcttcagccgtt
actattgatcgtagtaagtatgaaaccatattggataaagagagctttgctaactggcta
gataagctaaaagctgcagaagtgtttgcattcgataccgaaactgacagcctggactac
atggtagcgaaccttgttggtttatccttcgcagtggaagaaggtgttgcagcctatgta
ccggttgcgcatgactatcttgatgcacctgaacagctggacagagattgggtccttgag
caactgaagcctatccttgaagatgaaagtcaggctaaggttggacagaatctaaagtat
gacgcgagtgttttggctcgttacgatattgaaatgaaaggcatcaggcacgataccatg
cttgcttcttacgtttacaatagcgtaggtggaaagcatgatatggatagccttgctctt
cgtttcttgcaacatagctgtatctcctttgaaagtattgctggcaaaggtaagaatcag
cttaccttcaatcaaatcgaccttgaacaagctgcatcttatgccgcagaagacgcggat
gtaaccttacgtctgcacaatcgtcttgtagaaaatattgagcaggatgacaagcttaag
tctgtgtatgaagagatagaagttcctttggtacctgtactttctcgcatggaaagaacg
ggcgtatttattgacgatatgttgcttggtgctcagtctcaggaaatcgcagttcgctta
gagcaacttgagaaggaagcctatgaaatagcaggtgaagagtttaacttaagctctcca
aagcagttgcaggcgattttgtttgaaaaaatgggtttgccagtcgttaagaaaacacct
tcaggagcaccttctactaatgaagaagtattgcaggagcttgctttagattacccatta
ccaaagcgtattctggaatatcgtggattggctaagctgaaatccacatacacggacaag
ctgcctaagatgattaacccagaaactggtcgggtgcatacgtcataccatcaggcggta
acggcaactggccgattatcttcaaccgatcctaacctacaaaatataccaatccgtaat
gaagaaggacgccgtattcgtcaggcatttgttgctcctcacggctggaagattcttgcg
gtggattactctcagattgaactgagaattatggctcacctatcaggtgatcaggctttg
ctggatgcgtttaagcacggcaaagacatccatgcggcaaccgcagcagaagtgcttggc
attgaaattgatcaggtaagcagtgaacagcgtcgcagagctaaagcgatcaactttgga
ttgatctacggaatgagcgcatttggtctggctaaacagttgggtattcctcgtggtgaa
gcgcaaggttatatggatacctactttgaacgctatcctggagttatgcagtacatggaa
gacacccgagcacaagcttctgagcaaggctttgttgagactttgtttggtcgtcgacta
catctaccagaaatcaaatctcgtaacggtatgcgtcgtaaagcggctgaacgtgctgcc
attaacgcaccgatgcaaggtactgctgctgatattattaagaaggcaatgttattggta
gacgagtggattcaaaaagaaggtaatgatcgtgtaaggctattaatgcaagtgcacgat
gaattggtttttgaagttgaagagagcgctctggctgaaattgaaagtaaagtacagaat
ttgatggagtcggcagcatctatcaatgttcctctagttgctgaggctggtcacggtgat
aattgggatcaggcacactag
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