Vibrio iocasae: SNR28_11750
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Entry
SNR28_11750 CDS
T11169
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
vic Vibrio iocasae
Brite
KEGG Orthology (KO) [BR:
vic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vic03009
]
SNR28_11750 (rlmD)
Enzymes [BR:
vic01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
SNR28_11750 (rlmD)
Ribosome biogenesis [BR:
vic03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
SNR28_11750 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
PCMT
Methyltransf_15
TRM5-TYW2_MTfase
Methyltransf_11
Cons_hypoth95
RrnaAD
MTS
Methyltr_RsmB-F
Methyltransf_4
Methyltransf_23
DHquinase_II
FtsJ
Ubie_methyltran
Ribosomal_L22
Methyltrans_SAM
DOT1
CMAS
Motif
Other DBs
NCBI-ProteinID:
XHF85393
LinkDB
All DBs
Position
2:467632..468948
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AA seq
438 aa
AA seq
DB search
MARFFQPKKKTQIEKKHQQIKVERLDHHGAGIGYIGKKPVFIEGALPGEEVLTQLTESKS
KYSRGNLIKILKESPKRVAPFCKHYGECGGCNMQHLPHEEQIAYKSESLNQLFKKFAGES
VELESPITGSEQGYRRRARVSLLKDKKSGKLLFGFRKKKSKQIVPVTDCAVLETELNSLL
PELNSLLANLKGIANLGHLELVSGKDSPVVLLRYVRSLQQADIDVLRRWADEKSVAFYLQ
SDNALERIHGEEPFYDEAGVKVPFLPTNFIQVNQNVNQQMVEKALSWLELTPEDRVLDLF
CGLGNFSLPIAKQVSAVVGVEGVQEMVDQAAENARINGIDNVAYYQANLEDELTDKVWAQ
SKFDKVLLDPARAGAAGVVDQLSQFDTKRVVYVSCNPATLARDSQSLLNQGFRLVKLGML
DMFPHTGHLESMALFEKE
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtttctttcaaccgaaaaagaaaactcagatagagaaaaagcatcaacagatt
aaagttgaaaggctggatcatcatggtgccgggattggctacataggtaaaaagccagtt
tttatagaaggggcacttcccggtgaggaggtacttactcagcttacagaaagtaaaagt
aagtattcgcggggtaacttaatcaaaatacttaaagagagtccaaagcgtgttgcaccg
ttttgtaaacattatggtgagtgtggtggttgtaatatgcagcatttaccacatgaagag
cagattgcttataagagtgagtcgctaaatcagttgttcaagaagtttgctggtgagtct
gttgaactggaatcgccaataacaggtagcgaacaaggttatcgtcgcagagccagagtt
agtctgctgaaagataaaaagagtggaaaactgttatttggattccgtaaaaaaaagagt
aagcagatagtacctgtgacagactgtgccgtcttggaaacagagctgaactcactactt
cctgagctaaactctttactggctaatttaaagggcattgctaacttggggcatttggag
ttggtgtctggaaaagattcgccagtggttttattgcgttacgttcggtctttacaacaa
gccgatatagatgttttaaggcgctgggcagacgaaaaatcggtcgctttttacctgcaa
tctgacaacgctttggaacgaattcatggtgaagagcctttttatgatgaagctggtgta
aaggtcccgtttcttccaacgaactttattcaggttaaccagaatgtgaaccaacagatg
gttgaaaaggcgttatcctggcttgagttaacgccggaagacagagtattggatctgttt
tgtggtttggggaactttagtctaccgatagccaagcaggttagtgctgttgttggtgtt
gaaggtgttcaggagatggtggatcaggcggctgagaatgctcgtattaacggcatagac
aatgtggcgtattaccaggcaaatctggaagatgagctgacagataaagtatgggctcag
tctaagtttgataaggtgctgttagatccagcaagagcaggagcagcgggcgttgtagat
caactttctcaatttgatacaaagcgcgtagtttacgtttcctgtaatcctgctactcta
gcgagagatagccagagcttgctgaatcaggggttccgactggtaaaactgggtatgttg
gacatgttcccacataccggtcatttggaatctatggctttatttgaaaaagagtaa
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