Vibrio iocasae: SNR28_13485
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Entry
SNR28_13485 CDS
T11169
Name
(GenBank) serine hydrolase
KO
K07258
serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:
3.4.16.4
]
Organism
vic Vibrio iocasae
Pathway
vic00550
Peptidoglycan biosynthesis
vic01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vic00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
SNR28_13485
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
vic01002
]
SNR28_13485
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
vic01011
]
SNR28_13485
Enzymes [BR:
vic01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
SNR28_13485
Peptidases and inhibitors [BR:
vic01002
]
Serine peptidases
Family S11: D-Ala-D-Ala carboxypeptidase A family
SNR28_13485
Peptidoglycan biosynthesis and degradation proteins [BR:
vic01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
SNR28_13485
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S11
PBP5_C
Beta-lactamase2
Beta-lactamase
Peptidase_S13
RL10P_insert
Motif
Other DBs
NCBI-ProteinID:
XHF85722
LinkDB
All DBs
Position
2:complement(839554..840726)
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AA seq
390 aa
AA seq
DB search
MIKSKNLLKSLLVSTTLLTAGMAQSAPIVVPDAPQIAAKGYVLIDFNSGKVLAEKEKDTK
LSPASLTKMMTSYVIGQELARGNISLQDDVVISKNAWAKNYPDSSKMFIEVGTTVKVEDL
NRGIIVQSGNDACVAMAEHVAGSEDAFVDLMNAWAQSIGMDNTHFANVHGLDNPNLYSTP
YDMALLGRALIRDVPEEYAIYSEKKFSYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGY
SLVSSATEGKMRLVAVVMGTKSENARKAESKKLLNYGFRFFETVAPHKAGETFVNERIWM
GSQENVALGVAQDTFVTLPRGQAKNLKASFVLEKELRAPISQGDVVGTLYYQIDGEDIAE
YPLLALEDVEQGSLFSRLIDYIVLLFKSWF
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgattaaatcaaaaaacctactcaaatctttacttgtttcaacaacactgctgaccgca
ggcatggcacaatcagcaccaatcgttgttcctgatgctccgcaaattgctgcgaaaggt
tatgttctgatcgacttcaactcaggtaaggttctggctgaaaaagagaaagataccaag
ctatctcctgccagcctgactaagatgatgaccagctatgttatcggccaggaactggct
cgcggtaacatctctctacaagatgatgtggttatcagcaaaaatgcctgggcgaaaaac
taccctgattcttcgaagatgtttatcgaagtaggtacaactgtcaaagttgaagacctg
aaccgaggcatcatcgttcagtctggtaacgacgcatgtgtggcaatggctgaacatgta
gccggttctgaagatgcatttgtcgacctaatgaatgcatgggcacagtctattggtatg
gacaacacccattttgcaaacgttcacggtctggacaaccctaacctgtactcaacacca
tatgatatggctctactaggccgtgcacttattcgtgatgtaccggaagaatacgcaatc
tactcagagaagaaattctcttacaacggtattacccaatacaaccgaaacggtctgctt
tgggataaaagcatgaatgttgacggtatcaaaaccggtcatacctctaatgctggatat
agccttgtaagttcggcaactgaaggcaaaatgcgccttgtagcggttgtaatgggcact
aagagtgaaaatgctcgtaaagctgaaagcaagaaacttcttaactacggcttccgtttc
ttcgaaacagttgcacctcataaagcgggtgaaacatttgtaaacgagcgtatctggatg
ggttcacaggaaaacgtagctctgggtgttgcgcaagatacatttgtaactctgcctcgt
ggtcaggcgaaaaacctgaaagcaagcttcgttcttgaaaaagagctaagagcgccaatt
tcacaaggtgatgttgtcggtacactttactaccagattgatggtgaagatattgcggaa
tacccacttcttgctcttgaagatgtggaacaaggtagcctgttcagtcgtctgatcgat
tacatcgttctattgttcaaaagctggttctaa
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