Vibrio iocasae: SNR28_14525
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Entry
SNR28_14525 CDS
T11169
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vic Vibrio iocasae
Pathway
vic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SNR28_14525 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vic03019
]
SNR28_14525 (rne)
03009 Ribosome biogenesis [BR:
vic03009
]
SNR28_14525 (rne)
Enzymes [BR:
vic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SNR28_14525 (rne)
Messenger RNA biogenesis [BR:
vic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SNR28_14525 (rne)
Ribosome biogenesis [BR:
vic03009
]
Prokaryotic type
rRNA processing factors
SNR28_14525 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
XHF85908
LinkDB
All DBs
Position
2:complement(1050684..1053629)
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AA seq
981 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY
GAERHGFLPLKEIARDYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLNHWNAIKEASEANPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIFERA
RQHIQLVRPDFINRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLREAVRMDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLAL
SVLRLIEEEALKENSAQILAIVPVAIASYLLNEKRRSINHIEKHQDVKIIIVPNSDMETP
HFEVIRVREGEQQDLLSYLLPKKLEAMKEAEEKDPSEVDIKPKKIEEPALKGFAAPAQSA
PTPAPAPQPAAAPEKKAEETENKPGVIGRLFKALGSFLFGSSDAEAKKKEEEEKQKQEQE
KKDRNNNRNRRDRNNRRRSGNRDNRDQNKRKRRPAKGEEAQQAEKADSRKEQQNRKPKQD
KKTKPSKVAEQGKKLAAEASTDKGAEEKTAQVKQRRQRRQLKKQVRVKDQAATEQAVATQ
EAAVEAKAVETKVAKSEADKPKQNAPQQNEEREEGKQRRNRRSPRHLRANGQRRRRGRDR
RPNPFRLRKGGVASPEMAMGKVMPRYDLKPKRKERRNKKEVVETVALGGFACPEMAMGKV
IISHPVVEPAPVVEPVISEAPVVADVVEAPVVETPAVTEKPTVQETEPAVTETTEALLAE
KVATEEVVAESVEPVKAEIVEKKLYTAQVSAPMSKAPGPQETKEIEIIAAPFKEERYQPK
GAGSQVATNQASSAMTKPEGY
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcaaaaagaagagttgcgtgtcgctttggttgac
ggccagcgacttttcgatcttgatatcgaaagtccgggtcatgaatcaaagaaggccaat
atttataagggccgtatcacccgtatcgaaccaagtcttgaggcagcatttgttgattat
ggcgcagaaagacacggtttcctccctctcaaagaaattgcccgcgattacttcccagaa
ggttatacctaccaaggtcgtcctagtatcaaagaagttctgactgaaggtcaggaagtg
attgtacaggtagagaaagaagaacgtggcagcaaaggtgctgcactcaccaccttcatc
tctcttgccggtagttatcttgttctaatgccaaacaaccctcgagctggcggtatttcc
cgtcgtattgaaggtgatgagcgtacacaacttaaagcagcacttagcactctggaacta
cctcagggtatgggtctaattgttcgtactgcaggtgtaggcaaaagtgcagaagagctg
gagtgggacttaaacgtacttctgaaccactggaatgctatcaaagaagcttctgaagcg
aacccggcacctttcctgattcatcaggaaagtaacgtaattgttcgtgctattcgcgac
tacttgcgtcgtgatatcggtgaaatccttatcgacagcaacaccattttcgagcgtgct
cgccagcatattcagcttgttcgaccagacttcattaaccgagttaagaagtacgatggt
gaggtgccattgttcagtcactaccagattgaaagtcagatcgaatccgccttccaacgc
gaagttcgcctgccttctggtggttctatcgttatcgacccaacagaagcactgacctct
atcgatatcaactcagcccgtgcaactaagggtggcgatatcgaagaaaccgctctgaat
actaaccttgaagcagcagatgagatcgctcgtcagttacgtcttcgtgatttaggcggt
ctagttgtcatcgacttcatcgatatgacaccagttcgtcaccagcgtgaagttgaaaac
cgtctacgtgaagcagtccgaatggatcgtgctcgtgtacagattggtcgtatttctcgc
tttggtctgctagaaatgtcgcgtcagcgtctaagcccgtctcttgcagaagcaagccac
catatctgtcctcgctgttcaggtactggtgttgtacgtgacaacgaatcactggctctt
tctgttcttcgtctgattgaagaagaagcgctaaaagaaaatagtgctcagatactggcc
attgttcctgttgctatcgcttcatatctactcaacgagaaacgtcgctcgataaaccac
atcgagaagcatcaagatgtgaagatcattattgttccaaactcagacatggaaacaccg
cactttgaggttatccgtgttcgtgaaggtgaacagcaggatctgctttcttacctgctt
cctaagaagctggaagcaatgaaagaagcggaagaaaaagacccttctgaagttgatatt
aagcctaagaagattgaagagcctgcactgaaaggctttgctgctcctgctcaatctgct
cctactcctgcaccggctcctcagccagctgcggcgcctgaaaagaaagcagaagagaca
gagaataaacctggcgtaattggtcgactatttaaagctcttggcagcttcctgtttggc
tcttctgatgcagaagctaagaagaaagaagaggaagaaaagcagaagcaagaacaagag
aagaaagatcgcaataacaaccgcaatcgtcgcgacagaaacaaccgtcgccgcagtgga
aatcgtgataaccgcgatcaaaacaaacgcaagcgtcgcccggctaagggtgaagaagct
cagcaggcggaaaaagcggacagccgtaaagaacagcaaaaccgtaagcctaagcaagac
aagaagacaaaaccttctaaagttgctgagcaaggcaaaaaactcgctgctgaagcaagc
acagataaaggtgctgaagaaaaaacagctcaagttaaacaacgtcgccagcgtcgccag
ctgaaaaagcaagtgcgtgtgaaagatcaggcagcgactgagcaggctgtagcgactcaa
gaagctgctgtagaagctaaagctgttgaaactaaggttgcaaaatctgaagcagacaag
cctaagcaaaatgcacctcagcagaatgaagagcgcgaagaaggcaagcaacgtcgtaac
cgccgttcacctcgtcatttgagagcgaatggtcagcgccgccgtcgcggtcgtgaccgc
agacctaacccgttccgcctacgtaaaggtggtgttgcctctcctgagatggcaatgggt
aaagtaatgccacgatacgatctgaagccaaaacgcaaagaacgtcgcaacaagaaagag
gttgttgaaacggtagcactaggtgggttcgcttgtcctgaaatggcgatgggtaaggta
atcatcagccatccggttgtcgaaccagcgccagttgtagaacctgtgatcagcgaagct
ccagtcgtagcggatgttgtagaagcacctgtggtagaaactccggcggtaactgagaaa
ccaaccgttcaggaaacagaacctgcagttacagaaacaaccgaagcacttctagcggag
aaagtggctactgaagaagttgttgctgaatctgtagagccagtgaaagctgaaatcgtt
gagaagaagctttacactgctcaggtatctgcaccaatgtctaaggctcctggtccacag
gaaactaaagagattgagattattgctgctccgttcaaagaagagcgttaccagccaaaa
ggtgctggtagccaggtggcaaccaatcaggcatcgtcagcaatgactaaacctgaaggt
tactaa
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