Vibrio iocasae: SNR28_16595
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Entry
SNR28_16595 CDS
T11169
Name
(GenBank) DEAD/DEAH box helicase
KO
K19789
DNA repair protein RadD
Organism
vic Vibrio iocasae
Brite
KEGG Orthology (KO) [BR:
vic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vic03400
]
SNR28_16595
DNA repair and recombination proteins [BR:
vic03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
SNR28_16595
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Paralog
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
AAA_22
SLFN-g3_helicase
DUF7577
ERCC3_RAD25_C
DZR
T1R_D3-like
zf-tcix
AAA_16
FAD_binding_4
P-loop_SecA
AAA_30
Motif
Other DBs
NCBI-ProteinID:
XHF86302
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Position
2:complement(1480728..1482470)
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AA seq
580 aa
AA seq
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MYTLRPYQADSVKAVVHYFRKHSTPAVIVLPTGAGKSLVIAELARLAKGRVLVLAHVKEL
VEQNHEKYEGYGLTGSIFSAGLGRKETDQQVVFASVQSVVRNLDAFANQFSLLVIDECHR
VPDEPKSSYQKVISHLKELNPGIKILGLTATPYRLGMGWIYQYHTRGQVRSEDSRFFRDC
IFELPIRYLLDEGFLTPARMIDAPVLSYDFSQLKPANTGRYKEAELDLVIENSKRATPQI
VEQIKQLSKDKQGIMIFAATVRHAQEILSLLPESEADIVIGETHTQERDTIIRQFKERKI
KYLVNVSVLTTGFDAPHVDLIAILRPTESISLYQQIIGRGLRLSDGKEECLVLDYAGNNY
DLYQPEVGDPKPDSKSDIVTIPCPACGFNNNFWGKLDGNGFLLEHYGRRCQGYFEDEEDG
TREHCGYRFRAKYCNDCGADNDIAARICHECDATLVDPDKKLRDALNLKDALVFECRDMQ
LDTHKDASGKNQLKVTYIGDNNAQVHEFWTLNTKKQKERFYKQFVRSHLADRHRPFSESS
ATKVVNNQHRFRLPQFIIARKSGRFWKLRDRIFDDELKDH
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgtacacattaagaccctaccaagctgattcggttaaagccgttgttcactatttccgt
aagcattccactcctgcggtgatcgtattaccgacgggagcaggtaaaagcctggttatt
gctgaactggctagattagcaaaaggccgggtacttgtacttgcacatgtaaaagaactg
gttgaacaaaaccacgaaaaatacgaaggctacggtttaaccggttccatcttttctgca
ggactaggacgcaaagagaccgaccagcaggttgtgttcgcatctgttcagtcggttgtg
cgtaacctggatgcctttgcaaatcagttctctcttttggtgatcgatgagtgccaccgc
gtacccgacgaaccgaaaagcagctaccagaaagtaattagccacttaaaagaactcaat
ccgggaattaaaattctgggactcactgcaacaccttatcgattaggaatggggtggata
tatcagtaccacaccagaggacaagtgcgcagtgaggattcacgattttttcgcgactgc
attttcgaactgcctattcggtacttactagatgaaggctttttgacacccgcaagaatg
atcgacgcccctgtcttgagttacgacttttcccagctcaagcctgccaatacagggcga
tataaagaagccgaactggatctggttattgaaaactctaagagagcaacacctcaaata
gtcgagcagatcaagcagttaagcaaagacaaacaaggcattatgatctttgcagcaacg
gtaaggcacgcgcaggaaatcttgtcccttttgcctgaaagtgaagcggatattgtcatt
ggggagactcacacgcaagaacgtgacacgataatccggcagttcaaagaacgtaaaatt
aagtatctggttaacgtatctgtcttaaccacaggttttgatgcaccacacgttgatctg
attgcgatattgcgcccaaccgagtccataagcctctatcaacaaatcatcggccggggt
ctgcgcctatctgatgggaaagaagagtgtctggttctcgattacgctggaaacaactac
gacctctaccaaccagaagtcggagatccaaagccagattcaaaaagtgacattgtcaca
atcccctgccctgcttgtggtttcaataataacttttggggaaagctggatgggaatggt
ttcctcctggaacattacggacgccgatgtcagggatattttgaagatgaagaagacggt
acacgcgaacattgcggatacaggtttagggctaagtactgcaacgactgtggggccgat
aatgatatagccgccagaatctgccatgagtgcgacgctacattggtggaccctgacaaa
aagctgcgagatgccctcaacctcaaggatgcgctggtattcgaatgccgcgatatgcag
ttggatacgcacaaggatgccagcggaaaaaatcaacttaaagtgacatatatcggcgac
aacaacgcacaagttcatgagttttggacacttaatactaaaaagcagaaagagcgcttt
tataaacagtttgttcgttcacatcttgctgatcgtcaccgacctttttctgaatcatca
gccactaaggtcgtaaataatcagcatcgtttccgtcttcctcagtttataatcgcaaga
aaatcaggccgtttctggaagttaagagaccggatttttgatgatgaactcaaagatcat
taa
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