Vibrio iocasae: SNR28_21380
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Entry
SNR28_21380 CDS
T11169
Symbol
dnaX
Name
(GenBank) DNA polymerase III subunit gamma/tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
vic Vibrio iocasae
Pathway
vic03030
DNA replication
vic03430
Mismatch repair
vic03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SNR28_21380 (dnaX)
03430 Mismatch repair
SNR28_21380 (dnaX)
03440 Homologous recombination
SNR28_21380 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vic03032
]
SNR28_21380 (dnaX)
03400 DNA repair and recombination proteins [BR:
vic03400
]
SNR28_21380 (dnaX)
Enzymes [BR:
vic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SNR28_21380 (dnaX)
DNA replication proteins [BR:
vic03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SNR28_21380 (dnaX)
DNA repair and recombination proteins [BR:
vic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SNR28_21380 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_tau_5
DNA_pol3_delta2
DNAX_ATPase_lid
DNA_pol3_gamma3
AAA
DNA_pol3_tau_4
AAA_22
RuvB_N
AAA_5
AAA_16
AAA_14
AAA_2
ResIII
AAA_18
AAA_30
RCF1-5-like_lid
EAL
nSTAND3
SKI
PIF1
AAA_19
TsaE
AAA_assoc_2
Motif
Other DBs
NCBI-ProteinID:
XHF84005
LinkDB
All DBs
Position
2:complement(2555603..2557807)
Genome browser
AA seq
734 aa
AA seq
DB search
MSYLALARKWRPSQFDQVVGQAHVLTALENALNQNKLHHAYLFSGTRGVGKTTIGRLLAK
GLNCETGITATPCGECSTCREIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRF
KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISA
DDIHEQLDFILKKENVSVEQRALGMLSHAADGSMRDALSLTDQAIALGNGTVAVPIVSTM
LGTLDTDQAIHLLEAISTRQIQTAMSALGECAKNGVDWEGLLKELATQLHRVAMYQALPG
SLDPSRPDSEKIEHLSAQLNPQDVQLCYQIATKGREELALAPTEKIGLEMIVLRMMAFRP
ARVTGATKIVRASADEPAEVVQPMPKAVAAPEPVSAQPAQPKTEEPAPVRPTVAPEKAQQ
AVSKPVETPQSQPQQQESIAPVVSGPSYDDMPVYDESEDYQPVPPQYQDSQPVQVQPAQQ
SQQSTPSSSQGGQAPVEPQKPSALGGLRHQLRSRRASAGQATKGRPEKKSKAASPTSVIE
RVAQKSGGSGMVSQSTQAESKVPEDNEPYQWKPSFQPVVDKKEELTPTQIKQALEHTKTP
EMAEKLTKESIEQDKWSALIQRLNTAKLVEQLALNSAFSKQGSTIALSLRAPQAHLNTDK
AQSELLEALNQALGEECTLTVEVGTQGKTPLELREELYQGKLQAAHQSLADDPNVEFILT
RFSAELDNDSVRPI
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgagttatctagcattagcgcgtaagtggcgtccttcgcagtttgatcaggttgtaggg
caagctcatgtgttaaccgcacttgagaatgccttaaaccaaaacaagctgcatcatgct
tatcttttcagcgggacgagaggggttggtaaaaccactatcggtcgattgctggcaaaa
gggcttaactgtgaaacgggtattaccgccacaccttgcggagagtgttcgacttgtcga
gagatcgatgaaggacgctttgttgacctgctagaaatcgatgcagcgtcacgtaccaag
gtagaagatactcgcgagctgctggataacgttcaatataaacctgcccgcggcaggttt
aaagtttacctgattgacgaggtgcacatgctatctcgtcacagcttcaatgccctgttg
aagacgctggaagagccacctgagtacgttaagttccttctggcaacaacggatcctcaa
aagctaccggtaaccattttatcccgctgtttacagttccatctgaagcctattagcgca
gatgatatccatgagcagcttgattttattcttaaaaaagaaaacgtttccgtagagcaa
agggcgctcggcatgttgtcacacgctgctgatggcagtatgcgagatgctttgagcctg
actgatcaggcgatagcacttggcaacggaacggttgcggttccaattgtttcaaccatg
ttaggtacgctggacacggatcaagctattcatcttttggaagcgattagtacccgacaa
attcagactgcgatgtctgcgcttggggaatgtgctaaaaatggtgttgactgggaaggg
ctactcaaagagcttgcaacgcagttgcacagagtagcgatgtatcaggctttgcctggt
tcattagatccctctcgccctgactcagaaaaaatagaacacctcagcgcacagctaaat
ccgcaggatgtacagctttgctatcagatcgcgacaaaaggcagagaagagttagcacta
gccccaactgaaaagatcgggttagaaatgattgttcttcgaatgatggcatttcgacct
gccagagttacaggcgcaacgaaaattgttcgagcttctgcagatgaaccagcagaagtt
gttcagccgatgccgaaagcggtggcggctcccgagccggtaagtgctcaacctgctcag
cccaaaacagaagaaccagcacctgtgcgaccaacagttgctcctgaaaaagcgcaacaa
gcagtatcgaagccagtagaaacgccacaatctcagcctcagcaacaagagtccattgct
ccagtggtatctggtccaagctatgacgatatgccggtatacgatgagtcagaagactat
caacctgtgccgccacagtatcaggactcccaaccagttcaggtacagcctgctcaacaa
tcacagcaatccacgccatcttcctctcaaggagggcaagctccggttgagcctcaaaaa
ccgtccgcacttggtggactcaggcatcagttgcgctcccgaagagcgtcagctggacag
gcaacaaaaggcaggcctgaaaaaaagtctaaagcggcatctccaacgtcagtaattgag
cgtgtggctcaaaaaagtggcggttctggcatggtgtcgcaaagtactcaggcagaatcg
aaggtacctgaagacaacgaaccatatcaatggaagccaagctttcaacctgtagtggat
aaaaaggaagagttaacgccaacgcaaattaagcaggctctggagcacactaagacacca
gagatggcggaaaaactcaccaaagaatccatagagcaggacaaatggtctgctctgatc
caaaggttaaatactgcgaaattggtagagcagttggcgttaaactcggcatttagtaag
caaggcagcaccattgcactgtcgttaagagcacctcaggcacacctaaatactgataag
gcgcaaagtgaactattagaagcgcttaatcaggctctgggagaggagtgtacacttact
gtcgaagtaggaactcagggtaaaactccgcttgaactgcgagaggagctttatcaaggt
aaacttcaggcggcacaccaaagcctggcagacgacccgaatgtagagtttattctaacg
cgtttctctgcagagctagataacgatagtgttagaccgatatag
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