Vibrio iocasae: SNR28_21935
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Entry
SNR28_21935 CDS
T11169
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K10941
sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
vic Vibrio iocasae
Pathway
vic02020
Two-component system
vic02040
Flagellar assembly
vic05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vic00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SNR28_21935
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
SNR28_21935
09142 Cell motility
02040 Flagellar assembly
SNR28_21935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vic03000
]
SNR28_21935
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
vic02035
]
SNR28_21935
Transcription factors [BR:
vic03000
]
Prokaryotic type
Helix-turn-helix
Other families
SNR28_21935
Bacterial motility proteins [BR:
vic02035
]
Flagellar system
Flagellar assembly proteins
Others
SNR28_21935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
FleQ
Sigma54_activ_2
HTH_8
AAA_5
AAA_16
HTH_50
bpMoxR
AAA
AAA_2
AAA_7
Motif
Other DBs
NCBI-ProteinID:
XHF84113
LinkDB
All DBs
Position
2:complement(2675626..2677086)
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AA seq
486 aa
AA seq
DB search
MQVLAKLLVIEDNQDQKFQLSTILEFVGEHAEVINSDQIGQVDLSKEWTGCIVGTITDDK
VVAKITDILSTAIHIPLIKLGNSTVRLDEYPHYIGELAQPLNYPQLSNAFRHCAIYQGKQ
GLTASASRKSTLFRSLVGQSNGIQEVRHLIEQVAGTEANVLILGESGTGKEVVARNVHYH
SARSSGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFEMAEGGTIFLDEIGDM
PMPMQVKLLRVLQERTFERVGGNSTIKVNVRIVAATHRNLETMIEQQSFREDLFYRLNVF
PIEMPALKERQEDIPLLLQELMTRMEAEGSQQISFTPRAVDSLMEHNWPGNVRELANLVE
RMMILYPNSLVDVNQLPTKYRYSDIPEFQPEYDTSLGSVEEQEREALNGIFSENFVFEEE
SDSSFGASNALPPEGVNLKELLADMEVNMISQALDAQDGVVARAADMLGMRRTTLVEKMK
KYNLQR
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgcaggttttggcaaagttgctcgtcatcgaggataatcaggatcagaaatttcaatta
agtacgattcttgaatttgttggagaacatgctgaggtaataaactcagatcaaatcgga
caggtcgatctatctaaggaatggactggttgtattgttggtacaattacggatgataag
gtggttgcaaagatcactgatattctcagtaccgcgattcatatacccctgattaaacta
ggaaacagtactgtccgtctggacgagtacccacactatataggtgaactggctcagcca
ctgaattaccctcaactcagcaatgcatttcgtcattgtgctatttatcagggtaaacag
gggctaacggctagtgcatcacgtaaaagcactctcttccgcagcttagttggtcagagt
aacggtattcaggaagtcaggcatctaatcgagcaagtcgccggtactgaagctaacgtt
ctaatacttggtgaatcaggtacgggtaaagaagtcgtagcccgcaatgttcactaccat
tctgcgcgtagcagcggaccatttgttcctattaactgtggtgcaattccggcagagcta
ttggaaagtgagctttttggccatgaaaagggcgcttttaccggcgcaattactgcgcgt
aaaggtcgcttcgaaatggcggaaggcggtacgattttccttgatgaaattggtgatatg
ccaatgccgatgcaggttaagttgcttcgggtcctacaggaaagaacgttcgaacgtgtt
ggtggaaatagcacgataaaagtgaatgtcagaattgtcgctgccacccatagaaacctt
gaaaccatgatagagcaacagagtttccgggaagatctgttttatcgtctgaatgttttc
cctattgaaatgcccgccctaaaagaacgtcaggaagatattcctttgttgttgcaggaa
ttaatgacgcgaatggaagcggaaggtagccaacagataagtttcacaccgcgagcggta
gactctctaatggagcacaactggccgggtaatgttcgtgagttggctaatctggtcgag
cgtatgatgatcctctatccgaatagtttggtggatgtaaatcagctccctactaaatat
cgatactcagacatacctgagttccaaccagaatatgacaccagcctgggtagtgtagag
gaacaggaacgagaagcgctcaatggtattttctctgaaaattttgtgttcgaggaagag
tctgattcgtcgtttggtgcttcaaatgcactgccacctgaaggtgttaacctaaaagag
ttgctggctgatatggaagttaacatgattagtcaggcgcttgatgctcaggatggtgtt
gttgcccgtgcagctgatatgttgggaatgagacgcacaacattggttgagaaaatgaaa
aagtacaatctacagcgataa
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