Vibrio iocasae: SNR28_22630
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Entry
SNR28_22630 CDS
T11169
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vic Vibrio iocasae
Pathway
vic03030
DNA replication
vic03430
Mismatch repair
vic03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SNR28_22630 (dnaE)
03430 Mismatch repair
SNR28_22630 (dnaE)
03440 Homologous recombination
SNR28_22630 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vic03032
]
SNR28_22630 (dnaE)
03400 DNA repair and recombination proteins [BR:
vic03400
]
SNR28_22630 (dnaE)
Enzymes [BR:
vic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SNR28_22630 (dnaE)
DNA replication proteins [BR:
vic03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SNR28_22630 (dnaE)
DNA repair and recombination proteins [BR:
vic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SNR28_22630 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
MJ0607
Motif
Other DBs
NCBI-ProteinID:
XHF84241
LinkDB
All DBs
Position
2:complement(2801785..2805264)
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPKFIHLRVHSDFSMVDGLSKVPPLVKKVAELGMPAMALTDFTNLCGLVKFYNTAHGS
GVKPIIGADFTLQSDDFGEELTKVTVLAADNKGYNNLTLLISEAYLRGHVQHQPVIDKEW
LAKHSEGIIILSGGKSGEIGKALLKGNQPLVDKCVAFYQEHFADRFYLELTRTGRADEES
YLHFALELAEKAELPVVATNDVVFLSEEQFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYL
RSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGMEETEFLIKKSEEGL
EERLEFLFPDEKERLERRPEYDERLKIELEVINNMGFPGYFLIVMEFIQWSKDNDVPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFKAEPQ
LPEIYEADEEVKELIDMCRVLEGVTRNAGKHAGGVVISPTTITDFAPIYCDAEGNFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLAKEGLDPVRIESIPLDDAASFNVL
QNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDETWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPEEM
AKQRAVFEEGSIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTEKVVGLVDECIRMGLKVLPPDINSGLYRFNVDETGAVVYGIGAIKG
VGEGPIEIIIEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLIQAGALDRLGPHRAAMMA
SLDDAVKAAGQHHQAEAFGQADMFGVLTEAPDEVEQKYAQVPEWPEKVWLEGERETLGLY
LTGHPINAYLKELNKYTSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTRIGLMTLDD
RSGRMEVMLFSDALDKYAELLEKDKILVISGQVSFDDFNGGLKMSAREVLDIGEAREKFA
RGLSISIEQSQIDEQFFERFSSIIEPHRAGTVPVNVYYQRPDARARIALGAEWRVTPNDA
LLDDLKQLLGKGQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatcctaaatttatacacctgcgtgttcacagcgacttttccatggtagatggc
ttgtctaaagtgcctcctttggtaaaaaaagtcgctgagctagggatgccagcgatggct
ctgactgattttaccaacctgtgcggattggttaagttctacaacaccgctcatggatcg
ggtgttaagccgattatcggtgcagactttaccctacagtcggacgactttggcgaagag
ctgacaaaagtgacggtgctcgcagccgacaacaagggttataacaatcttaccctcctt
atttccgaagcctacctgagagggcatgttcagcatcaacctgtcatagacaaagagtgg
ctagctaagcatagcgaaggcatcattattttgtcgggtggaaaaagtggagaaatagga
aaggctttgctcaagggcaatcagcctttggttgataagtgtgtggctttttatcaggag
cactttgctgatcgcttttatcttgaattaacccgaaccggtcgtgccgatgaagagagt
tatctgcattttgcgctagagttagcggaaaaagctgagttaccagtcgttgctacaaat
gacgtggtgttcctttctgaagaacagtttgatgctcatgaaattcgagttgctatccat
gacggttataccctggaagaccctcgaagacctaaaaattacagtcctcagcaatacctt
cgtagcgaagaagagatgtgcgagctgttttctgacattccagaagctttagaaaacagt
gtagaaattgccaagcgatgcaatgtcaccgttcgccttggtgagtattttcttccggca
ttcccgacagaagggatggaagagacagagttcctgataaagaaatccgaagaaggcttg
gaagagcgactggagttccttttccctgatgagaaagagcgcttggaacgtcgtccggag
tatgatgaacgacttaagatagaacttgaagtaatcaataatatgggattcccgggttac
ttccttatcgtaatggagttcattcagtggtccaaagataacgatgtgcccgttggtccg
ggacgaggatctggtgcgggttccttggttgcatacgctctgaaaattaccgatctggat
cctttggaatatgacctgctgttcgaacgattcctgaaccctgaacgtgtctccatgccc
gatttcgatgtcgatttttgcatggataaacgagatcaggtcattgaccacgtggctgaa
atgtacggccgagatgcggtatctcagatcatcaccttcggtaccatggctgcaaaggcg
gtaatccgagatgtcggcagggtcctagggcatccttatgggtttgtagacagaatatct
aagcttgttccgcctgatccaggcatgactctggaaaaagcatttaaagcagagccgcag
ctaccagagatctatgaagctgatgaagaagtaaaagagctcatcgatatgtgtcgggtg
ctggaaggtgtaacccgaaacgcaggtaagcacgctggtggtgttgttatttcaccgacc
acaattactgactttgcaccgatttattgtgatgcagaaggtaactttccagttactcag
tttgataaaaacgatgtagaaacggctggtctggttaaatttgacttccttggtctaagg
accttaaccatcatcgactgggctcttgggttgattaatcctagattggctaaagaaggg
ctggatccggttcgtatagaatcaatcccactggatgatgctgcatcgttcaatgtattg
caaaactctgaaactacagcggtattccagttggaatcacgtggtatgaaagagctgatt
aaacgacttcagcctgactgttttgaagatatcatcgcgctggtggctttgttccgtccg
gggcctcttcagtcggggatggtagataactttatcgaccgtaagcacggtagagaggca
atctcttatccggatgaaacctggcaacatgaatctctgaaagagacgttagacccaacc
tacggcattatcctgtatcaggagcaggtgatgcagatagcacagattctggctggctat
acccttggtggagcagatatgcttcgtcgtgcaatgggtaagaaaaagcctgaagagatg
gctaaacagcgtgctgtttttgaggaaggctcaataaagaatggtgtcgacggcgaactt
gctatgaagatcttcgatctggtagaaaagtttgcaggttatggctttaacaaatcccac
tctgctgcctatgcgttagtttcctaccaaaccttgtggctaaaaacgcactatccggcc
gagttcatggctgcggtaatgactgcggatatggataacaccgaaaaagtagtcggattg
gtcgatgaatgtatccgtatgggacttaaggtacttccgccagatatcaactcaggctta
tatcgttttaatgttgatgagactggagctgtcgtttatggcatcggagccattaaaggg
gttggtgaaggcccgatagaaattatcattgaagcgcgtaataaagatggttacttcaag
gacttgtttgatttctgtgcgcgaattgatctgaaaaaagttaacaaaagagttatcgaa
aaactgatacaagcaggtgctcttgatcgattgggacctcatcgtgcggctatgatggca
tcattggatgatgcagtaaaagccgcagggcagcaccaccaggccgaagcgtttgggcag
gcggatatgtttggtgttctcaccgaagctcccgatgaagtcgagcagaagtatgcgcag
gtgccagagtggcctgaaaaggtatggctggaaggtgaacgagaaactctgggcctttat
ctgacagggcacccaattaatgcttatctaaaggaactaaataagtacaccagttgtcga
ttaaaagatgcaactccaacaaggcgagatcaatccgtaacggtcgctggtttggttatc
gctgccagagtgatgaccactaagcgaggtacgcgcatcggattaatgactctggatgac
cgttcaggcagaatggaagtaatgttgttctcagatgcgctggataaatacgcagaattg
ctggaaaaagataaaattttggtcatttctggacaggtcagctttgatgacttcaacggt
gggcttaaaatgtcggcccgcgaagtattagatattggtgaggctcgagagaaatttgcg
agaggtttatctatttcgatagagcagtcgcaaatagatgagcagttttttgaacgtttt
agttcaattatcgagccacacagagccggaacagtgcccgttaatgtatattaccaacgt
ccggatgcacgagcacgaattgcgcttggtgcagaatggcgagtaacgccgaatgatgca
ctgctagatgatttaaaacagctacttgggaaaggccaggtagaactcgaatttaactaa
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