Vibrio iocasae: SNR28_23010
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Entry
SNR28_23010 CDS
T11169
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vic Vibrio iocasae
Pathway
vic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SNR28_23010 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vic03019
]
SNR28_23010 (pnp)
03016 Transfer RNA biogenesis [BR:
vic03016
]
SNR28_23010 (pnp)
Enzymes [BR:
vic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SNR28_23010 (pnp)
Messenger RNA biogenesis [BR:
vic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SNR28_23010 (pnp)
Transfer RNA biogenesis [BR:
vic03016
]
Prokaryotic type
tRNA degradation factors
SNR28_23010 (pnp)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
OB_RRP5_4th
KH_2
aRib
KH_SLS1_2
S1_RRP5
S1_2
KH-I_KHDC4-BBP
Spt6_S1
DUF3016
Motif
Other DBs
NCBI-ProteinID:
XHF84316
LinkDB
All DBs
Position
2:complement(2892114..2894246)
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AA seq
710 aa
AA seq
DB search
MFANPVVKTFKYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVEGQDFFPL
TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDAFKNEVQVIATVVS
VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLDLVV
AGTESAVLMVESEADNLTEEEMLSAVVYGHDQQQAVINAINEFKAEVATPAWDWVAPEEN
TALNTKIAELAEAKLVEAYQITEKMARYDRIHEIAAEVNEVLLAEDPEANTKEIHTIFHD
LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ
RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD
EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGGDFVVLS
DILGDEDHLGDMDFKVAGTDTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE
AISGARDDISEFAPRIHTMKISAEKIKDVIGKGGAVIRQLTEETGTTIEIDDDGTIKIAA
TDNAQAKDAISRIEAITAEVEVGKIYTGKVARLADFGAFVTVLPGKDGLVHISQIAEQRV
EKVSDYLEMGQEVKVKVLEIDRQGRVRLSMKEAVEKPAEAEGDSKASDAE
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgttcgcgaatccagtcgttaaaacattcaaatatggtaaccacacggttactctagaa
actggcgtaatcgcacgtcaggcaactgctgctgtaatggtaacaatggacgacacttct
gtgtttgtttctgttgttggtaaaaaagaagcagttgaaggtcaggatttcttcccacta
acagttaactaccaggagcgtacttacgctgcaggcaaaatccctggtggattcttcaag
cgtgaaggtcgtccttcggaaggcgagactctgattgcacgtcttatcgaccgtccaatc
cgcccgctattcccggatgcatttaaaaatgaagttcaggttatcgcaacagtagtatct
gtaaaccctgatgttcagcctgatatcgtaacaatgatcggtacttctgctgctctagct
atttcaggtattccgttcaatggtccaatcggtgctgctcgtgtcggtcatatcgatggt
caactagtacttaacccaagcaacactgagctagaaacgtctaagcttgatcttgttgta
gctggtactgaatctgcagttctaatggttgagtctgaagctgataacctaactgaagaa
gaaatgctatctgcagttgtttacggtcacgatcagcagcaggcagtaattaatgcaatc
aatgagttcaaagctgaagttgcaactccggcttgggattgggttgctcctgaagagaac
acagctcttaacactaagattgctgaactagcagaagctaagcttgttgaagcttaccaa
atcactgaaaagatggctcgttatgaccgtattcatgagattgctgcagaagtaaacgaa
gtgctacttgctgaagatcctgaagcaaacaccaaagaaattcatactatcttccacgat
ctagagaagacagttgtacgtcgcagcatcattgctggtaacccacgtatcgatggtcgt
gaaaaagacatggttcgtgctctagacgtacgtacaggtgttcttccacgtactcatggt
tctgctctgttcactcgtggtgaaactcaggctcttgttactgctactctaggtacacag
cgtgatgctcaaatcattgatgagctaacaggtgagcgtaaagatcacttcctgcttcac
tacaacttccctccatactgtgtaggtgaaactggctttgttggttctcctaagcgtcgt
gaaatcggccacggtaaactggctaagcgtggtattgctgcagtaatgccttctgtagat
gagttcccgtacactgtgcgcgttgtttctgaaatcacagaatcaaacggttcatcttca
atggcgtctgtatgtggtacgtctctggctcttatggatgctggtgtgccaattaaatct
tctgttgcaggtatcgcaatgggtcttgttaaagaaggtggcgactttgttgttctttct
gacatcctgggtgacgaagaccaccttggtgacatggactttaaagtagcgggtactgac
actggtatcactgcactacagatggatatcaagattgaaggtatcacgaaagagatcatg
cagattgctcttaaccaggcacaaggtgcgcgtaagcacattctgtctgtaatggatgaa
gctatctctggtgctcgtgacgatatctctgagtttgctccacgtattcacactatgaag
atcagcgctgagaagatcaaagacgtaatcggtaaaggtggtgcagttatccgtcagcta
acggaagaaactggtacaactatcgaaatcgatgacgacggtactatcaagatcgctgca
actgacaatgctcaggctaaagacgcaatcagtcgtatcgaagcgattacagctgaagtt
gaagtaggtaaaatctacacaggtaaagttgctcgtcttgctgacttcggtgcattcgtt
actgttcttcctggtaaagatggtttggtacacatttctcaaatcgctgagcagcgtgtt
gagaaggtatctgattaccttgaaatgggtcaggaagttaaagttaaagtacttgagatt
gaccgccagggtcgtgtacgtctaagtatgaaggaagcagtagaaaagccagcagaagct
gaaggcgattcaaaagcttctgatgctgagtaa
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