Vibrio iocasae: SNR28_23605
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Entry
SNR28_23605 CDS
T11169
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vic Vibrio iocasae
Pathway
vic03410
Base excision repair
vic03430
Mismatch repair
vic03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SNR28_23605 (recJ)
03430 Mismatch repair
SNR28_23605 (recJ)
03440 Homologous recombination
SNR28_23605 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vic03400
]
SNR28_23605 (recJ)
DNA repair and recombination proteins [BR:
vic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SNR28_23605 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SNR28_23605 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SNR28_23605 (recJ)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XHF84419
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Position
2:complement(3034845..3036584)
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AA seq
579 aa
AA seq
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MIEITRRPEVDLSLLPDTIPQLLKRIYISRGITSAEQLDKSARGLISFQKLNGIQRAVEL
LLQFIENDKRIIVVGDFDADGATSSALSVVALRSLGCKSVDYLVPNRFEDGYGLSPEVVE
QAIEYQADVIMTVDNGVSSIEGVRYAKSKGIDVIVTDHHLPGSELPDADAMVNPNLESCH
FPSKSLAGVGVAFYLMMALRAHMRELNWFQNNGVQEPNLAELLDLVALGTVADVVPLDEN
NRILVHQGLQRIRAGKGRPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFG
VELLMSNNIYAARRMANELDGLNQTRKEIEEGMKQEAMAFCERLQFGEGNELPYGLALFQ
RDWHQGVIGILASRIKEKFHRPVIAFADGGDGYIKGSCRSIPGLHMRDTLDLIDKQHPGM
ILKFGGHAMAAGLTIKEESFNQFASAFDEAVRKELDETALKGVVVSDGELQPEEFSMAIA
EQLRAGGPWGQNFPEPVFDGEFKVLHQKLVGEKHLKLMVEPLFKGFPTNLTLDAIAFNVD
LRRWPDASVKTVTLAYRLDINEFRGNQSLQLMVEHIEAK
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgattgaaattacccgccgccctgaagtagatttgtctcttcttcccgataccatccct
caacttttaaaacgtatctatattagccgaggaatcacttctgcagaacaactagacaaa
tctgccagaggcctgatttcctttcagaagttaaacggaatacaaagagccgttgaactg
ttgcttcaatttattgaaaacgataagcgaattattgttgttggagattttgacgctgat
ggcgcaacgagctccgctttgtctgtcgttgctctgcgtagtttaggctgcaaaagtgtc
gattatctggtgccaaatcgttttgaagatgggtacggtttaagccctgaagttgttgag
caggctattgagtatcaggctgatgtcatcatgacggtggacaatggcgtttcttctatt
gaaggtgtccgttacgccaaatcaaaggggattgatgtgatcgttaccgatcatcacctt
cccggctctgagctgcctgatgctgatgccatggtgaatccaaatctcgaatcatgtcat
tttccttctaagtcattggctggtgttggggtcgccttctacttaatgatggcgttaaga
gcgcatatgcgtgagttaaactggtttcagaacaatggtgttcaggagcctaatctggct
gagttgctggatttggtcgctttgggaaccgttgctgatgtggtgcctctggatgaaaac
aatcgaatattggttcatcagggattacagcggataagagcaggcaagggccgaccgggc
attcaggcattgatcgaagtggctaaacgcgatgcaagaaggctcgtcgcagctgatttt
ggtttcgctttaggcccaagaatcaacgcagcaggtcgtttagatgacatgtcttttggt
gttgaactcttgatgagtaacaacatctatgcagcacgaaggatggcgaatgagctggat
ggactaaaccagactcgcaaagaaattgaagaagggatgaagcaggaggccatggctttc
tgtgaacgtcttcagtttggagaaggcaacgagttaccttatggccttgcgctatttcag
cgtgactggcaccagggagtcattgggattttagcgtccagaatcaaagagaagtttcat
cgcccggtgatagcatttgctgatggtggtgatggctatatcaaaggttcgtgtcgctct
attcccggtctgcatatgcgcgacactctggatttaattgataaacaacatccgggaatg
attctcaagtttggtggtcacgcaatggcggcaggacttactattaaagaagaaagcttt
aatcagtttgcatctgcttttgatgaggcggtgcgtaaagaattggatgaaaccgcgctg
aaaggtgtggttgtttctgacggtgagctacaacctgaagagttttcaatggctattgcc
gaacaacttcgcgctggtggcccatgggggcaaaatttcccagaacctgtgttcgatgga
gaattcaaagtcttgcaccagaagcttgtgggagaaaaacacctgaaactcatggtagag
ccgttatttaaaggctttccgaccaacctgacactggatgctatcgcttttaacgttgat
ttacgtcgctggcctgacgcatcagtcaaaactgtaacgcttgcctatcgtctggatatc
aacgagttcagaggtaatcagtcactacaactgatggttgaacatatagaggcaaagtag
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