Vibrio iocasae: SNR28_24970
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Entry
SNR28_24970 CDS
T11169
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vic Vibrio iocasae
Pathway
vic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SNR28_24970 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vic03019
]
SNR28_24970 (rnr)
03016 Transfer RNA biogenesis [BR:
vic03016
]
SNR28_24970 (rnr)
Enzymes [BR:
vic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SNR28_24970 (rnr)
Messenger RNA biogenesis [BR:
vic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SNR28_24970 (rnr)
Transfer RNA biogenesis [BR:
vic03016
]
Prokaryotic type
tRNA degradation factors
SNR28_24970 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
XHF84663
LinkDB
All DBs
Position
2:complement(3309351..3311831)
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AA seq
826 aa
AA seq
DB search
MSEKITQDKFADRESRNYENPIPSREFIIEFLTEANVPMNRNDLFEVLGLSGEEQYEGLR
RRLRAMERDGQLVFTRRQCYALPDKLELVKGYVIGHKDGHGWVRPEGSVGKDNDLLLPHH
QMRTILHGDYVLVQPAGTDKRGRKEGRLVRVLEERKTQIVGRFFMEQGFCYVVPDDSRIS
QDILIPEEHRIGARMGNVVVVEITDRASRTRGMMGKVVEVLGENMAPGMETQIAIRTHQI
PQDWPLEVEKQIQDLEEEVPEEAKTGRVDLRDLPLVTIDGEDARDFDDAVYCEAKPSGGW
RLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCM
VCEMTVSASGKLSGYKHYEAVMNSHARLTYNKVDAILNGDEELRERYGALAPHLEELHRM
YKVLKGSRDKRGAIEFETVETKFIFNAERKIDRIEPLIRNDAHKLIEECMILANIASASF
VEKLKEPALYRIHESPGEERLSGFRDFLGELGLNLTGGLEPAPTDYADLMKAIGERPDKE
LIQIMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQHGTH
KDRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELDGVIA
NVTGFGFFVRLTELHIDGLVHISTLANDYYQFDPIGQRLIGESFGHIYRLGDQVKVKVLS
VNLDDRQIDFELIETNRKLRGKGKTAKRRAAQAEKKAAAGKKEAVKSRKRGVKAKAKAMI
EPTKRPDGTTEESGSNPARKKTKAEKARKKKSRTKVNKARGKRKSK
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaaagatcacacaagacaagtttgctgatcgagaatctcgcaattatgaaaac
ccaattccaagccgggaatttatcattgagtttttaaccgaggctaacgtaccgatgaac
agaaatgatctgtttgaagtccttggcctttctggtgaagagcagtatgaggggctgcgc
cgtcgtttaagggcaatggaaagagatggacagttagtatttactcgcaggcagtgttac
gcgttgcccgataagcttgagctggtcaaaggttatgtgattggtcataaagatgggcat
ggctgggtaagacctgaaggttccgtcggcaaagataatgatctgttacttcctcaccat
cagatgagaaccatcttgcatggcgattacgttcttgttcaacctgctggcactgataaa
cgaggccgcaaagagggcaggcttgttcgagtgctggaagagagaaaaactcagatagtt
ggtcgtttctttatggagcaaggcttttgctacgtggttcctgatgactcacgcattagt
caggatattctgattcccgaagagcaccgaattggtgcccgtatgggtaatgttgttgtg
gtcgaaataacagacagagcaagtcgtacacggggaatgatggggaaagttgttgaagtg
ctgggggaaaacatggccccgggtatggagactcaaatagcaatccgaacccaccaaata
ccacaggactggccattagaggttgaaaaacagattcaagatctcgaagaagaggtacca
gaagaggcgaaaacaggccgggttgaccttcgagatctcccgctagttaccattgatggt
gaagatgctcgtgatttcgatgatgctgtgtattgtgaagctaagcctagtggagggtgg
cgcttgtgggtagctattgcagatgtgagctactatgtacgccctgacaccgccttagat
aaagaagcgattaatcgtggtaactctgtttacttcccatctcaggttgtacctatgcta
ccagaagttctttctaatggcctctgctcgctaaacccacaagtcgaccgcctctgcatg
gtttgtgaaatgacggtttcggcctctggtaagctctctggatacaagcattatgaagcg
gtaatgaactctcatgcacgtctgacttacaacaaagtggatgccattttgaatggggat
gaagagcttcgtgagcgatatggagcgctggcaccgcatctcgaagaactacataggatg
tacaaggtacttaaaggctctcgtgataagcgcggtgcaattgagtttgaaaccgttgaa
accaagtttatcttcaatgcagagagaaagatcgaccgtatcgagccattgattcgtaac
gatgctcacaagttaatagaagagtgcatgattttggcgaacatcgcttccgcttctttt
gttgaaaagctgaaagagcctgcgttgtatcgtatccatgaatctccgggcgaagaacgc
ttatcaggattcagagactttcttggtgagcttggacttaatttgactggtggattagag
ccagccccaacagattacgctgatcttatgaaggcgataggcgaacgaccagataaagaa
cttatccaaatcatgttgttgcgctctatgaagcaggcagtctacaacgcggacaatgca
ggtcactttggtctggcattgaaacgctatgcacacttcacttcaccaattcgtcgttat
ccggatcttttgctgcatagggcaattaagtacctgatagctaagcaacacggtacacat
aaagatcgctggacaccaacaggtggatatcactattcattcgatgatatggatttctac
ggtgagcagtgttccatgactgagcgacgagcggatgatgcgacgcgagaagtgtctgac
tggctcaagtgtgagtacatgcaggatcatgtcggtgaagaattggacggggttattgcc
aatgtaactggatttggtttcttcgtaaggttgactgagctgcatattgatggcctggta
cacatttctacactagcaaatgattactaccaatttgatccaataggtcaaagacttata
ggtgagagttttggtcatatctatcgattaggtgatcaggttaaagtgaaagtactttca
gttaacctagatgaccgtcaaattgactttgaattgatcgaaacaaatcgtaagctacgc
ggcaaaggaaaaacggctaagaggcgtgcggctcaggctgaaaaaaaagcggctgctggc
aaaaaagaagcggttaagtctcgaaagcgtggtgtaaaggcgaaagccaaagccatgatt
gagccaaccaaaagaccggatggtacaaccgaggaatcaggaagcaaccctgcacgtaag
aagacaaaagccgagaaagcgcgtaagaagaagtcgcgtacgaaagtaaataaggctcgc
ggtaagcgaaagagcaaataa
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