Vibrio iocasae: SNR28_26120
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Entry
SNR28_26120 CDS
T11169
Name
(GenBank) HDOD domain-containing protein
KO
K07181
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
vic Vibrio iocasae
Pathway
vic05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vic00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
SNR28_26120
Enzymes [BR:
vic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
SNR28_26120
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Gene cluster
GFIT
Motif
Pfam:
HDOD
EAL
DUF5104
Motif
Other DBs
NCBI-ProteinID:
XHF84860
LinkDB
All DBs
Position
2:complement(3538724..3539950)
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AA seq
408 aa
AA seq
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MYTYVARQPIFNKSKQTIGYELLFRDGERNAFPSSIGENRATYRLVVENFLSMGRNPSVL
SSRSFVNFTYDSIIHDLPLMLPKDQVVIEVLETCEPTDELLAAIRKLNRSGYMIALDDFT
FDHKWDEFLPYIHIIKIDVMRHGVDDACDYVIEQKERGVTASFLAEKVENQDEFDAVMEA
GFRYFQGYFFSKPEIVKQKYVSPEQILALELIKEVMQPEVNYNKVEQIIAKDLSLSYKLL
RFVNTMSPRIDKPIESFKQALVYLGQEKLKVFVSLAAASYVSGNKPQELYGLSMQRAQFC
LMMSRISQFQGYRNQAFIIGLFSMLDALMDTPLENMIEDLPLSENAKSALLNREGTLGCL
LKLEECYEKADWIGLEEMCTELGLELADVSPILSEAQKWSQEMLEMSK
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgtatacatatgttgctcgtcagccgatttttaacaaaagtaagcaaacaataggttat
gaactgctgtttcgtgatggtgagcgaaatgcctttccaagtagcataggagaaaaccgg
gcaacataccgtttggtagtagagaatttcctgtcaatggggcggaatccatccgttttg
tcttcccgaagctttgtcaattttacctatgactcgattattcacgatctaccgctcatg
ctacctaaagatcaggtggttatagaggttttggaaacctgtgagccaacggatgagtta
ttggcggcaatcagaaagctcaaccggtctggctatatgattgcattggacgactttacc
tttgaccacaaatgggacgaatttcttccatacatccacatcatcaaaattgatgtaatg
agacatggtgttgatgatgcgtgtgactatgttattgagcagaaagagagaggtgtcacc
gcttcttttttagctgaaaaagtagaaaaccaagatgaatttgatgccgttatggaagcg
ggctttcgctattttcagggatactttttcagtaaaccagaaattgtgaaacaaaagtat
gtcagtccagagcagatattagcgttggagttgatcaaagaggtaatgcaacctgaggtc
aactacaacaaggtagagcaaattattgccaaagacctttcgctttcgtacaagcttctg
cggtttgtgaataccatgtctccacgtattgacaagcctattgagtcatttaagcaagca
ttagtttacttaggacaggagaagctaaaggtgtttgtgtcactggcagcggcttcgtac
gtgtcgggtaacaagcctcaggagctatatggactctcgatgcaaagagcgcagttctgc
ctgatgatgtctcgcataagtcagttccaggggtatcggaatcaggcgtttatcattggt
ctcttttcaatgcttgatgcactgatggacacaccgctggagaacatgattgaagattta
cctctttcggagaacgccaaatctgctttgctaaatcgtgaaggtacacttggttgcctg
ctaaagctggaagagtgttacgaaaaagcggattggattggtctggaagagatgtgtact
gaactgggccttgagctggcagatgtaagtccgatactgagtgaagctcagaagtggagc
caggaaatgctagagatgtccaaatag
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