Vibrio iocasae: SNR28_26320
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Entry
SNR28_26320 CDS
T11169
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vic Vibrio iocasae
Pathway
vic03420
Nucleotide excision repair
vic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SNR28_26320 (uvrD)
03430 Mismatch repair
SNR28_26320 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vic03400
]
SNR28_26320 (uvrD)
Enzymes [BR:
vic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SNR28_26320 (uvrD)
DNA repair and recombination proteins [BR:
vic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SNR28_26320 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
SNR28_26320 (uvrD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XHF84893
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Position
2:complement(3584597..3586768)
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AA seq
723 aa
AA seq
DB search
MDASLLLDGLNDKQREAVASPLENILVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSV
TFTNKAAAEMRGRIEELMMGSASGMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSEDQQ
RLLRRLIKAQNLDEKQWPARQASWWINGKKDEGLRPNHIDAYNDPVTKTWLQVYKAYQEA
CDRAGLVDFAEILLRAHELLRDNKFIREHYQARFKHILVDEFQDTNNIQYAWLRMMAGPG
CKVMIVGDDDQSIYGWRGAKIENIHRFTEEFPSVNTIRLEQNYRSTKTILNAANELISNN
TERLGKELWTDGLEGEKVSVYSAYNELDEARFAVNKIKEWQDKGGALSDTSMLYRNNAQS
RVLEEALIQAGLPYRIYGGMRFFERQEIKDALSYLRLMANRNDDSSFERIVNTPTRGLGD
KTLETIRFAARDRGATMWEASVALVEEKVLAGRAAGAMSRFIELINALEDDTAEMSLHEQ
TDHVIKASGLFAMYEQEKGEKSKARIENLEELVTATRQFEKPEEAEEMTLLSAFLSHAAL
EAGEGQADEFDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEDAVRLEEERRLCY
VGMTRAMEKLYITYAEMRRLYGQDKYHKPSRFIRELPEECLEEVRMKAQVSRPATSGRFS
QTSVKQNFNETGFNLGQRVKHPKFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTQYAKL
ETM
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggatgcatctttacttcttgatggcctgaacgataaacagcgtgaggcggttgcttct
ccgttagaaaacatcctggtattagcgggtgcaggtagtggtaaaacgcgagtgctggta
caccgaatcgcctggttgatgtctgttgagcaagcttccccattttcgattatgtcggtt
acgttcaccaacaaagcggccgctgaaatgcgaggcagaatcgaagagcttatgatggga
agtgcatctggcatgtggaacggtactttccatggcatttgtcaccgaatcctaagagct
cactatctcgatgcaaaattgcctgaagacttccagattatcgattcagaagaccagcaa
aggttacttcgccgcctgattaaggctcaaaatttagatgaaaaacagtggccagcgaga
caggcgagctggtggattaatggcaaaaaagatgaaggtctgagacctaaccatatcgat
gcctacaacgacccagttaccaaaacctggttacaagtttataaagcttatcaagaggct
tgtgacagagcggggctggtggactttgctgaaatcctactaagggctcatgagctactt
agagacaacaagtttatacgtgaacattatcaggctcgtttcaagcacattcttgtggat
gagttccaggataccaacaacattcagtatgcgtggctcaggatgatggctggaccgggc
tgtaaagtgatgatcgttggtgatgatgaccagtccatctatggctggcgtggtgcgaag
attgaaaatatccaccgatttaccgaagagtttccttccgttaatactattcgtctggaa
cagaactatcgttcgaccaaaaccatactgaatgctgccaacgagttgatctcaaacaac
actgagcgtcttggtaaggaactgtggacggacggtctagagggtgaaaaagtttctgtt
tactctgcttacaatgaactagatgaagctcgttttgctgtaaacaaaattaaggagtgg
caggataaaggcggtgcactttcagatacttcaatgctttaccggaacaacgcccaatct
cgtgttctggaagaggcgttaatccaggccgggttaccttatcggatctatggcggtatg
cgattcttcgagcgtcaggaaatcaaggatgctcttagctacttaagattaatggcaaac
cgaaatgatgactcttctttcgagcgtatcgtaaatacaccgacgcgcggtctgggggat
aaaacacttgaaaccattcgcttcgctgcgagagatcgtggagcgactatgtgggaagcg
agtgtcgccctggtcgaagaaaaggttttggctggcagagctgcgggtgccatgagtcgc
tttattgaactgattaatgcacttgaagatgatactgctgagatgtctctgcatgaacag
actgaccatgttattaaggcttccggtttgttcgctatgtacgagcaggagaagggtgaa
aaatccaaagctcgcatagagaacctggaggaacttgtcacagctacacgccagtttgaa
aagccagaagaagcggaagagatgacattgctatctgcattcttatctcatgctgctctg
gaagcgggtgaaggtcaggctgatgagtttgatgatgctgttcagttaatgacacttcat
agtgcaaaaggcctggagtttcctctggtatttatggttggtgtggaagaaggcatgttc
cctagccagatgtctgcggaggatgcggttcgcctggaagaagaacgtaggctctgttat
gtgggtatgacccgtgcaatggaaaaactgtatatcacttacgcggaaatgcgtcgttta
tatggtcaggacaagtaccacaagccatcccgatttatacgagaactgccggaagagtgt
ctggaagaagtgcgaatgaaggcacaagtgagcagaccggcaacatcaggaaggtttagc
cagactagcgttaagcagaacttcaatgaaacagggtttaaccttggccagcgtgtgaag
caccctaagtttggggaaggtaccattatcaactttgagggaagtggtccgcaaagtcgt
gttcaggtggctttcaacggagagggcatcaaatggctggttactcaatatgcgaagctg
gagaccatgtag
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