Vibrio sp. dhg: DBX26_05030
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Entry
DBX26_05030 CDS
T11094
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vid Vibrio sp. dhg
Brite
KEGG Orthology (KO) [BR:
vid00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vid03032
]
DBX26_05030 (topA)
03400 DNA repair and recombination proteins [BR:
vid03400
]
DBX26_05030 (topA)
Enzymes [BR:
vid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
DBX26_05030 (topA)
DNA replication proteins [BR:
vid03032
]
Prokaryotic type
DNA Topoisomerases
DBX26_05030 (topA)
DNA repair and recombination proteins [BR:
vid03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DBX26_05030 (topA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
AXT70424
LinkDB
All DBs
Position
1:1073533..1076160
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AA seq
875 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGKDFVVKSSVGHVRDLPTAGQSTGEKAAAISTKGMSAEE
KARVKKEKDRKALIKKMGINPYHDWEANYQILPGKEKVVSELQKLAKDADYVYLATDLDR
EGEAIAWHLREIIGGDEERYKRVVFNEITKNAIQQAFQTPGELNMDGVNAQQARRFMDRV
VGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREINAFVPEEFWDIHANTKTKDKADF
KLLVAQKDGVAFKPVNEAETKAAMSVLEKASYEVCKREDRPTKSKPSAPYITSTLQQAAS
TRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVDAVRDFIGSEFGDKYLPASPLK
YGSKEGAQEAHEAIRPSSVDVKAEDLQGVDADAHKLYALIWNQFVACQMTPAEYDSTTIS
VKAEEFTLKAKGRILKFDGWTRVQRPMGKNEDTILPAVQLGDKLSLESLDPKQHFTKPPA
RFTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVDQRRFYAEKMGEIVTDRLDDSFN
DLMNYDFTARMEQKLDQIAEGEVNWKSVLDNFFTDFTGDLEKADLDESEGGMKLNHIVMT
DIECPTCGRPMGIRTASTGVFLGCSGYALPPKERCKTTINLGDEEGIINVLEEDVETAAL
RAKKRCPICETAMDAYLIDDKRKMHVCGNNPNCEGYIVEYGEFKVKGYDGPVVECDKCGS
DMVLKNGRFGKYMDCTSETCKNTRKILKNGEVAPPKEDPVHFPELPCENSDAYFVLRDGA
SGLFMAASNFPKSRETRAPLVSELALYEERLPEKFKYLATAPQEDPDGRPAVVRFSRKTK
ENYVRSEENGKPSGWTALYVDGKWEVTDKRKKAKA
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcactcgttatagtggagtcaccagccaaggcaaagacaataaataagtac
cttggtaaagactttgttgttaagtctagtgttggtcatgtgcgtgatctgcctacggcc
ggccaaagcactggtgagaaagcagctgccatttcaactaaagggatgagtgctgaagag
aaagcacgagtcaaaaaagagaaagatcgtaaagcgctgatcaaaaaaatggggatcaac
ccttatcacgattgggaagcgaattatcagattcttcctggcaaagaaaaagtagttagc
gaattacaaaaattagccaaagatgctgattacgtctatctcgcaaccgatttggaccgc
gagggggaagcaatcgcatggcaccttcgtgagatcatcggtggcgatgaagagcgatac
aaacgagttgtttttaacgaaattacgaaaaatgctatccagcaagctttccagacacct
ggtgagctaaatatggatggcgtaaacgcgcagcaagctcgtcgattcatggaccgcgtg
gttggcttcatggtgtctccattactatggaagaaagttgctcgtggcttgtctgcaggg
cgtgttcagtcggtagcggttaagttgctggtagaacgtgagcgcgaaatcaacgcattt
gtgccggaagaattctgggacatccacgcaaacaccaagactaaagacaaagcggacttc
aaactgctggttgctcagaaagacggcgtagcgtttaagccggttaacgaggcagaaacc
aaagcagcgatgtctgtgctggaaaaagccagctacgaagtttgcaagcgtgaagaccga
ccaacgaaaagtaagccgtcagcgccttacatcacttcgactctgcagcaagcggcaagt
acccgcttaggctatggcgttaagaagaccatgatgctggctcaacgcttgtatgaagcg
ggttacatcacctatatgcgtactgactcaactaacttgagtgcagaagctgtggatgct
gtccgtgatttcatcggttctgagtttggtgacaagtaccttccagcttcaccgttaaaa
tacggcagcaaagaaggggctcaagaggcgcacgaagcgattcgaccgtctagcgttgat
gtgaaagcggaagacctgcaaggtgtcgacgcagacgctcataaactttacgcattaatt
tggaaccagttcgttgcgtgtcaaatgacgccagcagaatacgattccacaaccatcagc
gtcaaagctgaagagttcacattaaaagccaaaggtcgcatcctgaagtttgacggttgg
actcgcgtacaacgtccaatgggaaaaaacgaggacacaatccttcctgcggtgcagctt
ggcgataagctgagcctagagtcacttgacccgaaacagcactttaccaagccgccagca
cgctttacagaagctgcactggttaaagaacttgaaaagcgtggtattggccgtccatcg
acttacgcgtctatcatctcgacgattcaggatcgtggctacgtgaaagtcgaccagcgt
cgattctacgcagagaaaatgggtgagatcgttacagaccgtttggacgatagctttaat
gatttgatgaactacgactttaccgcgcgtatggaacaaaagctggaccaaatcgcagaa
ggcgaagtcaactggaaatcagtactggacaacttctttactgacttcaccggtgacctt
gaaaaagccgacctggatgagtctgaaggtggtatgaagcttaaccacattgtgatgaca
gacatcgaatgtccgacatgtggccgcccaatgggtattcgtacagcatccaccggcgta
ttcctaggttgttctggttatgcactgccacctaaagagcgttgcaaaactaccatcaac
ttaggcgatgaagaaggtatcatcaacgtcttagaagaagacgtagaaaccgcagcgcta
cgtgccaagaaacgttgtccaatctgtgaaacagcgatggacgcgtacctaatcgacgat
aaacgtaagatgcacgtttgtggtaacaacccaaattgtgaaggttacatcgttgaatac
ggcgagtttaaagttaaaggctatgatggaccggttgttgagtgtgacaagtgtggttct
gacatggtgcttaagaatggtcgcttcggtaaatacatggattgcacgagcgagacatgt
aaaaacacccgtaagattctaaagaacggtgaagtcgcgccgccgaaagaagatccagtg
cacttccctgaactgccatgcgaaaactcggacgcttactttgtgttgcgtgatggggca
tctggcctgtttatggcagccagcaacttccctaaatcacgcgaaacacgagcgccactt
gtttcagagcttgcgctttacgaagaacgcttaccagagaagttcaaatatctcgcgaca
gcaccgcaggaagaccctgatggtcgtccggcagtggttcgttttagccgtaaaacgaaa
gagaactacgttcgctctgaagagaacggcaagccaagcggttggactgcgctttatgtc
gatggtaaatgggaagtcaccgacaaacgtaaaaaagccaaagcttaa
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