Vibrio sp. dhg: DBX26_12530
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Entry
DBX26_12530 CDS
T11094
Name
(GenBank) tRNA pseudouridine(13) synthase TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
vid Vibrio sp. dhg
Brite
KEGG Orthology (KO) [BR:
vid00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vid03016
]
DBX26_12530
Enzymes [BR:
vid01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
DBX26_12530
Transfer RNA biogenesis [BR:
vid03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
DBX26_12530
Prokaryotic type
DBX26_12530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
AXT71809
LinkDB
All DBs
Position
1:complement(2718327..2719370)
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AA seq
347 aa
AA seq
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MSDILSSLAYLTGKPVASAKIKAQPEHFQVSEDLGFAFTGEGEHLMVRIRKTGENTSFVA
NELAKACGVKSKDVSWAGLKDRHAVTEQWLSVHLPKGETPDFSAFLAQYPNIEILATDRH
NKKLRPGDLVGNGFVVTLSEVTDIADVERRLEKIKQVGVPNYFGAQRFGNDGNNLEEARR
WGRENVRTRNQNKRSMYLSAARSWIFNRIVSARLEQGMFDKFVEGDVAQTSAGNVTVDAS
NIAAMQAQFIDGDAAITAALAGDNALPTQADALALEQPFLDEEPDLMALIRGNRMRHDRR
NVALKPQDLAWSVEGNNITLTFSLDAGSFATSIVRELVNEVKVEREY
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacattttatcttcattggcatacctaacgggtaagcctgtcgcgtcagcaaaa
atcaaagcgcaaccagaacattttcaggttagcgaagatctcggctttgcctttactggc
gaaggggagcatttgatggtgcgtattcgtaaaacgggtgagaacaccagcttcgttgct
aacgagttagctaaagcttgtggtgttaaatctaaggatgtgagctgggctggcttaaaa
gaccgccatgcggtgacagaacaatggttgagcgttcatttaccaaaaggtgaaacaccg
gacttttccgcgtttttagctcagtaccctaatatcgaaattctggcaacggatcgtcac
aacaaaaagttacgtccgggtgatttggttggaaacggatttgtcgtcactttgtctgaa
gtgacagacatcgcggacgtagagcgtcgtcttgaaaaaataaaacaagttggtgtgccg
aactactttggtgctcagcgctttggcaatgatgggaataacctggaagaagcccgtcgt
tgggggcgtgaaaacgtacgtactcgaaatcaaaataagcgcagtatgtacctgtcagcc
gcgcgatcttggatttttaaccgcatcgtttctgcgcgtttagagcagggcatgttcgac
aagtttgtcgagggtgatgttgcacaaacctccgcaggtaacgtgacggttgatgcgagc
aatatagcggcgatgcaagctcagtttatcgatggagacgcggctattactgctgcactt
gctggtgataatgcattaccgacccaagccgatgctttggcattagagcaaccgttccta
gatgaagagcctgacttgatggcgcttatccgtggtaatcgcatgcgtcatgatcgccgt
aatgttgcactaaagccacaagatcttgcttggagcgttgaaggtaacaatattacgctg
actttctcattagatgctggctcgttcgctacatccattgttcgtgagttagtcaacgag
gtaaaagtagaaagagaatactaa
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