Vibrio sp. dhg: DBX26_15020
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Entry
DBX26_15020 CDS
T11094
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vid Vibrio sp. dhg
Pathway
vid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DBX26_15020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vid03019
]
DBX26_15020
03400 DNA repair and recombination proteins [BR:
vid03400
]
DBX26_15020
Enzymes [BR:
vid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DBX26_15020
Messenger RNA biogenesis [BR:
vid03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DBX26_15020
DNA repair and recombination proteins [BR:
vid03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DBX26_15020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AXT72208
LinkDB
All DBs
Position
1:complement(3211528..3213363)
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AA seq
611 aa
AA seq
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MTSTLLAEPSDSPVTPQRVLEDVFGYQKFRDGQQEVIDAAIDGQDSLVIMPTGGGKSLCY
QIPALVRNGITLVISPLISLMKDQVDQLKANGVAAECVNSTMNREELLSVYNRMHNGQLK
LIYVSPERVLMRDFIERLESLPLAMIAVDEAHCISQWGHDFRPEYASLGQLKQHFSHVPF
MALTATADDATRRDILERLRLNDPQVYLGSFDRPNIRYNLVEKHKPVSQIIRYLETQKGN
CGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDTDERAYVQEAFQRDDIQIVVATVAFG
MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLFDPADISWLRRMLDEKDD
GPQKQVESHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPCGNCDICLDPPKHFDATEEAR
KALSCVYRVNQSFGMGYVVEVLRGMQNIRVRENGHDKISTYGIGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDVALELAVPRLDTAARAAKSDKLTSKNYDKKLF
AKLRKLRKSIADEDGLPPYVVFSDATLIDMAEILPTSYGEMLAVSGVGQRKLEKYADPFL
DLIQEHITHHG
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgaccttgttagccgaaccttcagactcgcctgtaacgcctcaacgtgtgttg
gaggacgtcttcggttatcaaaaattccgcgatggtcagcaagaagttatcgatgctgct
attgatggacaagacagcttggtgatcatgcctaccggcggtggtaaatctctctgctat
caaattcccgcgctggtacgaaacgggatcaccttggttatctctccgctgatttctttg
atgaaagatcaggtggaccagctaaaagccaatggtgtcgcggcggaatgcgtgaactcg
accatgaacagagaagaactgctgagtgtatataaccgtatgcacaacgggcagctgaag
ctgatttatgtttctccagagcgggtcttgatgcgtgattttattgaacgccttgaaagt
ctgcctctggcgatgattgcggttgacgaggcgcactgtatctcgcagtggggacatgat
ttccgtcctgaatacgcgtcactgggccagcttaaacagcacttttctcatgttccattt
atggcgttaacggcgaccgctgatgatgccacccgtcgggatatcttagagcgtttaaga
ctgaacgacccgcaggtttatctcggcagctttgaccgcccaaacattcgctataatctg
gtggaaaaacacaagcctgtttctcagatcatccgctatttggaaacccagaaagggaac
tgcggcattatttattgtggtagccgcaagaaagtggaaatggtgacagagaaactgtgt
aacaaccatattcgcgcagcaggttatcatgctggcatggataccgatgaacgcgcttat
gttcaggaagcgtttcagcgtgacgatatccagatcgtagtagcgaccgtcgcttttggt
atgggcatcaataaacctaacgtgcgcttcgtggtgcattttgatattccgcgcaatatc
gagtcctactatcaggaaacgggccgagcagggagagatggcttaccagcagaagcgatg
atgctttttgacccagccgacatcagctggctgagacgcatgctggatgaaaaagacgat
ggtccgcagaagcaggtagaaagccataagctgaatgcgatgagtgcgtttgctgaagct
cagacttgtcgccgtcaggttctgctcaactattttggcgaatatcgtgagaaaccatgt
ggtaactgcgatatctgcctcgatccaccgaaacacttcgacgcaaccgaagaggcacgc
aaagcgctgtcttgtgtctatcgtgtgaaccaaagctttggcatgggttatgtcgtggaa
gtactgcgcggtatgcaaaatatccgcgtgcgtgaaaatggccacgataaaatatccact
tatggaatcggccgtgaccacagccatgattattgggtaagtatcttccgccagttaatc
cataaaggtttgttgttccagaacattacccgtaactcaaccttgcagcttacggaagaa
gcgcgtcctttactgcgtggcgatgtggcactggagctcgcggtaccacgtctggatact
gcagcacgagcggctaagtcggataaactgaccagtaaaaactacgataagaagctgttt
gccaaactgcgtaaactgcgtaagtcgattgcggatgaagatggcttaccaccttatgtg
gtcttcagtgatgcgacactgattgatatggcggagattctgccaacctcttatggtgaa
atgcttgcagtcagcggggtgggtcaacgtaaacttgagaaatacgccgatccattctta
gatcttattcaagaacatattacccatcacggttaa
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