Vibrio sp. dhg: DBX26_16525
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Entry
DBX26_16525 CDS
T11094
Name
(GenBank) sensor domain-containing phosphodiesterase
KO
K20962
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
vid Vibrio sp. dhg
Pathway
vid05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vid00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
DBX26_16525
Enzymes [BR:
vid01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
DBX26_16525
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GFIT
Motif
Pfam:
EAL
GGDEF
GAF_2
DUF5547
Motif
Other DBs
NCBI-ProteinID:
AXT72585
LinkDB
All DBs
Position
2:complement(191769..193691)
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AA seq
640 aa
AA seq
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MGRIQTLDYKIPDSMQKSWQEIVNLLAQIGEVPTTLIMRAHQDYLEVNTSSNTPGNPYKS
GDKESHGSGLYCEYVINNQQELIVPYAPEDEVWCSNPDIKLGMVSYSGLPLLWPNGEVFG
TICMLDSKANKFSETYLQLMSTFKDSIEAQLAVVFQQHKLLRLNHELQNRVENRTTDLAQ
LSYSLTKEIDRRKAAEKQVSYQKTHDQGTGFLNRSALEQVVEKSLQALKDDMQSLVIINI
GFSNARSIQTRYGFEAFDEILKEFHSRLSERVSSFVTGRPSSNDLVLLVSGDDVESKLNQ
LLEEISSVSVGNFYNNRTEVHLHSYIGVVRAQRNSNAKQLLQNACYAMLLCKESGEAYRY
FSESHSNDLNNHSQLEGYLLQAVRNDDLMLYFQPKVNPTTHEWVGAEALLRWRHPVLGDV
SNEALIRMAEQNGLIFEVGLFVLRTAIAKAKQWSEMTDNFKIAVNVSPIQLQNVNFADQV
EHLLEAFHLPPQFIELEVTESALIADETLAVTTLNKLHQLGVTLSLDDFGTGFASFSYLK
KYPFDAIKVDKSFVQQMDKSENDRAIIRSIIHIVKKLELHVVVEGVESTSQEQFLIDEGC
DVVQGFLYGKPMPCNEFEQGLLSQRPLDERPTYSSEFAPK
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atggggagaattcagacattagattataaaatccctgactccatgcaaaaaagttggcaa
gagatagtcaacctgcttgctcaaataggtgaagtgccgaccacacttatcatgcgtgcc
caccaggactatcttgaagtaaatacctcaagcaacacgccaggaaacccttacaagtcc
ggagacaaggaatcacacggcagcggtttatattgcgagtatgtaattaataaccagcag
gagctgatcgttccttacgccccagaagacgaagtgtggtgcagcaaccccgatataaaa
cttggaatggtatcctattctggccttccgttactttggcccaatggtgaggtgttcggg
actatttgtatgcttgattctaaagctaacaagttcagtgaaacgtatcttcagttaatg
agcacgttcaaagactccattgaagctcagcttgcggtggtgtttcagcaacacaaacta
ttgcgcctgaaccatgaactacagaaccgtgtagaaaacagaaccacagaccttgcgcaa
ctaagttattcattaaccaaagaaatcgatcggcgcaaagctgcagagaaacaagtaagc
tatcagaaaactcacgatcaaggcacgggattcttaaatcggtccgctttagagcaggta
gttgaaaaatctcttcaagcgcttaaagatgatatgcaatctctcgtcatcatcaatatc
ggctttagtaacgcgagaagtatacaaacacgatatggattcgaagcctttgacgaaata
ctcaaagaatttcattcgcgcctttccgaacgtgtttccagttttgttacaggaagaccg
agttctaatgacttggtgctgttagtctccggggatgatgtagagagcaagctcaatcaa
ttacttgaagagatttccagcgtaagcgtgggcaacttttacaataataggactgaagtt
cacttacactcctacatcggtgtggtcagggcccaaagaaatagcaacgccaagcaactg
ctgcaaaacgcctgttatgccatgctgttgtgtaaagaatctggggaagcataccgatac
tttagtgaaagtcattcaaacgaccttaacaaccatagccagctagaaggctatttatta
caagccgtacgtaatgatgatctcatgctctactttcagccaaaggttaaccccaccacg
cacgaatgggttggcgctgaagccttattgcgttggcggcatccggtattaggcgacgtc
tccaacgaagcattgatccgaatggccgagcagaatggcttaatatttgaagtcggatta
tttgttcttcgtaccgcgatagcaaaagctaagcaatggtcagagatgacggataacttt
aaaattgcggttaatgtctctcctatccaattacaaaacgttaattttgccgatcaggtt
gagcaccttctcgaagcgtttcatctcccaccccagtttatcgaattggaagtcactgaa
agtgccttaatcgccgatgaaacgcttgcggtgacaacactcaataaacttcatcagctt
ggcgtgacattgtcacttgatgactttggcaccggatttgcctcatttagttatctgaag
aagtacccatttgatgccataaaagttgataagagctttgtacagcaaatggataaatca
gaaaacgaccgagcaattattcgctccattatccacatcgtcaaaaaacttgagcttcac
gtcgtcgtggaaggtgttgagtctacaagccaggagcagtttttaattgatgaaggctgc
gacgtagtacaaggatttctctacggcaaacccatgccctgtaatgaatttgagcaaggc
ctactcagtcagcgtccattagatgagcggcccacctattcgtccgagtttgcgcctaaa
taa
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