Vibrio sp. dhg: DBX26_19590
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Entry
DBX26_19590 CDS
T11094
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vid Vibrio sp. dhg
Pathway
vid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DBX26_19590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vid03019
]
DBX26_19590
Enzymes [BR:
vid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DBX26_19590
Messenger RNA biogenesis [BR:
vid03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DBX26_19590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Rubella_Capsid
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AXT73155
LinkDB
All DBs
Position
2:865436..866971
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AA seq
511 aa
AA seq
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MGFTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAILEGKDVMAAAQTGTGKTAGFTLPIL
ERLSNGPRVRSNHIRALILTPTRELAAQVQENVFMYSRHLPLTSAVVFGGVKINPQMLRL
RKGADVLVATPGRLMDLYSQNAIKFDQLEVLVLDEADRMLDMGFIRDIRKILDLLPKQRQ
NLLFSATFSNEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPSDVKKKAPMLVKLIND
GDWRQVLVFMRTKHGANRLAKFLVEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVAT
DIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCAIEAPELFAIER
LIQEVLPRKELDGFAPTNVVPESKLDTRPIKPKKPKKPKKPKAPQAEGSNTQPADKKASN
GAGKPKRRFNGNGKGNNSGNKNGTNQAGAGKPKGNREGQGRSNTQPNGNKPNGNKSGNGG
KPAGNRKPQGAKPVSNKPSGQRRKARPQPAN
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgggttttacctcgttaggtctatctgctccaatccttaaagctattcaggaaaaaggc
tacgataccccttctccaattcaagctcaggcaattccggcaatattggaagggaaagac
gtcatggcagcagcacagactggtacaggtaaaacagcaggctttacgctgccaatcctg
gagcgtttgtccaatggacctcgcgttcgtagtaaccatattcgtgctttaatcctgacc
cctacccgtgagcttgcggctcaggtacaggaaaacgtcttcatgtacagccgtcacttg
ccgcttacgagcgccgtggtatttggtggtgtaaaaatcaatccgcaaatgctgcgcctg
cgtaaaggtgcggatgtactggtcgcgactccaggtcgtctaatggacctttacagccag
aacgcaattaagttcgaccaactggaagtactggtgctggacgaagcggaccgtatgtta
gatatgggcttcattcgcgatattcgtaagattctcgatttactacctaagcagcgtcag
aacctactgttctctgcgacgttctcaaatgagatacgcgaccttgcgaaaggtttggtg
aacaaccctgtcgagatctcagttaacccagcaaactctacagcacgaactgttgaacaa
agtatttacccatcagacgtgaagaaaaaagcgccgatgctggtgaagctgattaatgat
ggtgactggcgacaggtactggtattcatgcgtacaaaacatggcgcaaaccgcttggct
aagttcctggtagagcaaaatctaccagcggcagcgattcacggtaataaaagccaaggt
gcacgtaccaaagcactggctgattttaaatcgggtgaaattcgtgtgctggttgcgact
gacatcgccgctcgcggtattgatattcctcaattgccacaagttgtgaactttgaattg
ccaaaagttgcagaagattacgttcaccgcattggtcgtactggtcgtgcgggcgaagtg
ggcaaagcgatctctctggtttgtgcgattgaagcgccagaattatttgcgatcgagcgt
ttgatccaagaagtgttgccacgtaaagagcttgatggcttcgcaccaacgaatgtcgtg
ccagagtcaaaactggatacgcgtccgattaagccgaaaaaaccaaagaaacctaaaaaa
ccaaaagcacctcaagcggaaggcagcaacacgcaacctgccgataaaaaagcctctaac
ggtgcaggtaaacctaaacgccgtttcaatggtaacggcaagggtaataacagcggcaac
aaaaatggcactaaccaagccggagcgggtaaaccaaaaggtaaccgtgaaggccaaggg
cgctcaaacacccaaccaaatggcaacaagccaaatggaaataaaagtggtaatggcggg
aagccagcaggtaatcgcaagccacaaggcgctaaaccagtcagcaataagccatcgggt
cagcgtcgcaaggctcgtccacaaccagcaaactaa
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