Vibrio sp. dhg: DBX26_23955
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Entry
DBX26_23955 CDS
T11094
Symbol
glyA
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
vid Vibrio sp. dhg
Pathway
vid00260
Glycine, serine and threonine metabolism
vid00460
Cyanoamino acid metabolism
vid00630
Glyoxylate and dicarboxylate metabolism
vid00670
One carbon pool by folate
vid00680
Methane metabolism
vid01100
Metabolic pathways
vid01110
Biosynthesis of secondary metabolites
vid01120
Microbial metabolism in diverse environments
vid01200
Carbon metabolism
vid01230
Biosynthesis of amino acids
vid01240
Biosynthesis of cofactors
vid04981
Folate transport and metabolism
Module
vid_M00140
C1-unit interconversion, prokaryotes
vid_M00975
Betaine degradation, bacteria, betaine => pyruvate
Brite
KEGG Orthology (KO) [BR:
vid00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
DBX26_23955 (glyA)
09102 Energy metabolism
00680 Methane metabolism
DBX26_23955 (glyA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
DBX26_23955 (glyA)
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
DBX26_23955 (glyA)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
DBX26_23955 (glyA)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
DBX26_23955 (glyA)
Enzymes [BR:
vid01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
DBX26_23955 (glyA)
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Gene cluster
GFIT
Motif
Pfam:
SHMT
Beta_elim_lyase
Aminotran_1_2
DegT_DnrJ_EryC1
OKR_DC_1
Aminotran_5
Motif
Other DBs
NCBI-ProteinID:
AXT73969
LinkDB
All DBs
Position
2:1841886..1843148
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AA seq
420 aa
AA seq
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MFNTTQNIEAYDSELWSAIVKEEQRQEDHIELIASENYTSPRVMQAQGSKLTNKYAEGYP
AKRYYGGCKFVDEVEVLAIERAKQLFGAEYANVQPHSGSQANAAVYMALCEPGDTVLGMS
LAHGGHLTHGSHVNFSGKIYNAVQYGLNAETGEIDYEQVEQLALEHKPKMIVAGFSAYSR
VVDWQRFRDIADKVGAYLFVDMAHVAGLVAAGVYPTPVPFADVVATTTHKTLRGPRGGLI
VSRDAELEKKINSAVFPGGQGGPLMHVIAAKAVAFKEALEPEFAEYQKQVVANAQVMAKV
FIERGFDVVSGGTDNHLFLLSLIRQKLTGKAADAALGMAGITVNKNAVPDDPQSPFVTSG
LRIGTPVITTRGFGEAECEMLAGWISDILDVLDDPQALASTIEVVGSKVQSLCRDFPAYQ
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacactactcaaaacatcgaagcgtacgacagtgaactatggtcggcgattgta
aaagaagaacagagacaagaagaccacattgagctgattgcttctgaaaactacaccagc
ccacgagtgatgcaagctcaaggtagtaaactaaccaataaatacgctgagggttacccg
gcaaaaagatactacggtggctgtaaattcgttgatgaagtagaagtattggcgattgaa
cgtgcaaaacaactgttcggtgcggaatacgcgaacgtacaaccacactcagggtcacaa
gcaaacgctgccgtgtacatggctctttgtgaaccaggtgacacagtactaggcatgagc
cttgctcacggtggtcacttgactcacggttcgcacgttaacttttcaggcaaaatttac
aacgctgttcaatacggtctaaacgctgaaacgggtgaaatcgactacgaacaagttgaa
caactagctcttgagcacaagcctaaaatgatcgttgctggtttctcagcatactcacgt
gtcgttgactggcaacgcttccgcgatatcgcggacaaagttggcgcttacctattcgtt
gatatggcgcacgtagcgggattagttgcagctggtgtttatccaaccccagtacctttc
gcggatgttgtagcaaccacaacacacaaaacgctacgcggtccacgcggtggtttgatt
gtttctcgcgacgctgaactagagaaaaagatcaactctgctgttttccctggtggtcag
ggtggccctctaatgcacgtgattgcggcaaaagcagtagcgtttaaagaggcgttagag
ccagaattcgctgaataccagaaacaagttgtggctaatgctcaggtaatggcgaaagta
tttatcgagcgtggtttcgacgttgtatcgggtggtacagacaatcacttattcctgttg
agcctaatccgtcagaaattgacaggtaaagcggcagacgcagcacttggcatggcgggt
atcaccgtaaacaaaaatgctgtaccggacgacccacaatctccattcgttacttcaggc
ctgcgcattggtacgccagtgattacaacgcgtggtttcggtgaagcggaatgtgaaatg
ctagcaggttggatctcagacattcttgatgtccttgatgacccgcaagcgctggcaagc
acgattgaagtcgtaggaagcaaagtgcagtcactatgccgtgatttccctgcataccaa
tag
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