Vibrio sp. dhg: DBX26_24245
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Entry
DBX26_24245 CDS
T11094
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vid Vibrio sp. dhg
Pathway
vid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DBX26_24245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vid03019
]
DBX26_24245
03009 Ribosome biogenesis [BR:
vid03009
]
DBX26_24245
Enzymes [BR:
vid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DBX26_24245
Messenger RNA biogenesis [BR:
vid03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DBX26_24245
Ribosome biogenesis [BR:
vid03009
]
Prokaryotic type
rRNA helicases
DBX26_24245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Flavi_DEAD
WSD
Motif
Other DBs
NCBI-ProteinID:
AXT74024
LinkDB
All DBs
Position
2:1908303..1910222
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AA seq
639 aa
AA seq
DB search
MQDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAF
SLPLLNKLDLNQRKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMR
ALKNGAHVIVGTPGRVQDLINRERLYLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPES
AQRVLFSATMPPMLKKIVERFLRDPVMVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSSMEEIQLPLRDQVAEARLAQLGAELEAEKEHKSLDKFAELVEKLQTSLEIDPAM
LAAMLLKRQQGKRPLFYIGEDPMVEAIERDKQRRKERREGGRDGGREGGRSFNNQDWDTY
QLQVGREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQLPKAMTSEAANKLSKLR
IRQQDVGAVVCDFDDFRESRGGRRDGGRRDGGGYRGNRDGGARREGGRREGGFRGNREGS
RDGNREGAERRFDRNRGGDHRGNYRGERGHGRGRRTPEA
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgcaagattctgttattcaattcagtgatttatctctgaatgattctatcctttctgct
ctagacggaatgggtttcgtgtcaccaactccaattcaggctgcggcaatcccacacctg
ttggaaggtgctgacgcgctgggcaaggcacaaacgggtacaggtaaaacggcagcattc
tcactgcctcttctcaacaaactagatttaaaccaacgtaaaccacaagcaatcgtactt
gctccgactcgtgagctagcgattcaggttgcagcggaaatgaaaaaccttggtaaaaac
atcaagggtttgaaagttctagaaatctacggtggtgcttctatcgttgatcaaatgcgt
gcacttaagaatggcgcgcatgttattgttggtactcctggccgtgttcaagaccttatc
aaccgtgaacgcctatatctagacgaggttaatactttcgtacttgatgaagcggacgaa
atgctaaacatgggtttcgtggacgacgtaactgcaatcatggagcacgctcctgaatca
gcgcaacgcgttctgttctctgcaactatgcctccaatgctgaaaaagattgttgagcgc
ttccttcgtgaccctgtaatggtagacgttgctggtaagaaccacactgtagacaaagtt
caacagcagttctgggtagtgaagggtgtagagaaagatgaagcgatgtctcgtcttctt
gaaactgaagaaacggatgcgtcaatcgtattcgtacgtactcgtcaagatactgagcgt
ctagctgactggctttcagctcgtggctttaaagctgcagcactacacggtgatatccct
cagtctctacgtgagcgtactgttgatcacatcaaacagggtgttatcgatatccttgta
gcaactgacgttgttgcacgtggtcttgacgttccacgtattactcacgtatttaactac
gacatcccattcgatgtagagtcatacattcaccgtatcggtcgtacaggccgtgctgga
cgtaaaggtaaagcgatccttcttgttcgcactaaccaaatccgcatgcttcgtactatc
gagcgtgtaactaagtcatcaatggaagaaatccaacttcctctacgtgaccaagttgct
gaagctcgtctagctcagctaggtgcagaactagaagctgagaaagagcacaaatcacta
gataagtttgctgagttggttgagaaactacaaacttctctagaaatcgacccagcaatg
cttgctgcgatgcttcttaagcgtcagcaaggcaaacgcccactgttctacatcggtgaa
gacccaatggtagaagcaattgagcgtgataagcagcgtcgtaaagagcgtcgtgaaggt
ggtcgtgatggtggtcgtgaaggtggccgcagcttcaacaaccaagattgggatacttac
cagctacaagttggccgtgagcaaggtgttcaagttaaagacatcgttggtgctctggca
aacgaacttggtctaggtaaaggttctatcggtgcgatcaagctggcacaaggtcatact
ttcgttcagctaccaaaagcaatgacttctgaagccgcgaacaagttgagcaaactacgt
atccgtcaacaagatgttggtgcggtagtatgtgacttcgatgatttccgcgagtctcgt
ggtggtcgtcgtgacggtggacgtcgtgatggtggtggttaccgtggtaaccgtgatggt
ggtgctcgtcgcgaaggtggccgtcgtgaaggtggtttccgtggcaaccgcgaaggtagc
cgtgatggtaaccgcgaaggtgctgagcgtcgtttcgaccgtaaccgtggtggtgatcac
cgtggtaactaccgtggtgaacgtggtcacggccgtggccgtcgcactccggaagcataa
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