Vagococcus intermedius: OL234_02070
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Entry
OL234_02070 CDS
T09229
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
vie
Vagococcus intermedius
Brite
KEGG Orthology (KO) [BR:
vie00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vie03019
]
OL234_02070
Messenger RNA biogenesis [BR:
vie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OL234_02070
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
HDOD
Motif
Other DBs
NCBI-ProteinID:
WEG73718
UniProt:
A0AAF0CVM6
LinkDB
All DBs
Position
468696..469637
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AA seq
313 aa
AA seq
DB search
MKKLRELAIDEAFEMFVLVKQADVRMAKNGKKFIAFTFQDTSGSIDGKFWDASEEEIKRF
VAGSVVMLGGKREVYQSNPQIKILHLRLATEEEPNSPSLYMEKAPIQREEMMEEINQTIF
DITNANWNRIVRHLLTQYQTEFFEFPAAKRNHHAFAGGLAYHTVSMLRIAKSICKEYPEL
NPALLYSGVILHDLGKVIELSGPISTEYTLAGNLVGHIVLVNEEITKACQTLKIDDHSED
VLVLKHVILAHHGLLEYGSPVRPKILEAEVLHQIDNLDASIQMMLGSLKQIEPGDYTERI
FGMDNRNFYLPRM
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaattaagagaattagcaattgatgaagcttttgagatgtttgtattagttaag
caagctgatgtacgtatggctaaaaatggtaaaaaatttatagcctttacctttcaagat
acatcaggaagcattgatggaaaattttgggatgcttcagaagaagaaattaagcgtttt
gtagcgggctctgttgttatgttgggaggaaaacgtgaagtgtatcaaagtaaccctcaa
attaaaattttacacttacgactggcaactgaagaagaaccaaactcaccaagtctctat
atggagaaagcaccaatccagcgtgaggagatgatggaagaaattaatcaaaccattttt
gatattacgaatgctaattggaatcggattgtccgtcatttattgactcaatatcaaaca
gaattctttgagtttccagcagccaaaagaaatcatcatgcttttgctggcgggctagct
tatcatactgtttcgatgttacgtattgctaaatcaatttgtaaagaataccctgagtta
aatccagccctactttattcaggtgttattttacatgatttaggaaaagttattgaatta
tctggtcctatttcaaccgagtataccttggctggcaatttagttggacatattgtttta
gtgaatgaagaaatcacgaaagcctgtcaaacattaaaaattgacgatcattcagaagat
gttttagtattaaaacatgttattttagctcaccatggtttattagaatacggctcacct
gttcgccctaaaattttagaagcagaggttcttcatcagattgataatttggatgcctca
attcagatgatgttaggttctttaaaacaaatcgaaccaggtgactatacggaacgtatc
tttggaatggacaatcgtaatttttatttaccacgtatgtaa
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