Vagococcus intermedius: OL234_04555
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Entry
OL234_04555 CDS
T09229
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vie
Vagococcus intermedius
Brite
KEGG Orthology (KO) [BR:
vie00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vie03032
]
OL234_04555 (topA)
03400 DNA repair and recombination proteins [BR:
vie03400
]
OL234_04555 (topA)
Enzymes [BR:
vie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
OL234_04555 (topA)
DNA replication proteins [BR:
vie03032
]
Prokaryotic type
DNA Topoisomerases
OL234_04555 (topA)
DNA repair and recombination proteins [BR:
vie03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
OL234_04555 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Toprim_2
HypA
Motif
Other DBs
NCBI-ProteinID:
WEG74172
UniProt:
A0AAF0CWK1
LinkDB
All DBs
Position
985056..987134
Genome browser
AA seq
692 aa
AA seq
DB search
MAYKYLVIVESPAKAKTIEKYLGRNYKVVASVGHIRDLPKSKMGVDIENNYEPHYISIRG
KGPVIKELKKLAKKAQKVYLASDPDREGEAIAWHLAHLLDLDLEDKNRVVFNEITKEAVK
AAFKEPRSINLDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKIILERE
EEIRQFEPEEYWSIAANFLKKRKKFKASFYGVDGKKTKLATAEEVKAVTDRLEGDAYTIT
KITKKERKRNPAKPFTTSSLQQEAARKLNFRTRKTMMVAQQLYEGIALGKQGTVGLITYM
RTDSTRLSNTAKNEAASFIEETYGAEYAIGFKETSSKEKGAQDAHEAIRPSSILRTPESV
KQYLDKDQFKLYNLIWSRVVASQMTSAVLDTMRVNLEQNGVMFVANGSKIKFPGFMKVYI
EGNDEGKEEKENILPELDEGEEVKAVDLERKQHFTQPPARFSEATLIKTLEENGVGRPST
YAPTLETIQRRYYVKLVSKRFEPTELGEIVNGLIVEFFPRIVDINFTAQMEEDLDKIAEH
EEQWKEVVDRFYKPFAIELDSAEENMEKIQIKDEPAGFDCEECGHEMVIKLGRYGKFYAC
SNFPDCRNTKAIVKEIGVKCPTCKKGEVIERKSKKNRLFYGCSDYPECEFTSWDKPIGRD
CPKCSHYLVEKKIKGGKQVLCSDCDYKEDIQK
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggcgtataaatatttagtaatcgtggaatcaccagctaaagcaaaaacaatcgaaaaa
tacctaggtaggaattataaagtcgtcgctagtgttggacatattcgtgatttaccaaaa
agtaagatgggtgtcgatattgaaaataattatgaaccccattatatttcaatccgaggt
aaaggacctgttattaaagaattaaagaaattagcaaaaaaagcacaaaaagtttatctt
gcaagtgacccggatagagaaggggaagctattgcttggcatctggcacatttgttagat
ttggacttagaggataaaaatagagttgtatttaacgaaattactaaagaggctgtcaag
gccgcttttaaagaaccacgttcaatcaatcttgatttagttgatgcgcaacaagctcgt
cgtatcttggatcgtttagtgggctactcaattagcccaattttgtggaagaaagtcaaa
aaaggtttgagcgcaggtcgcgttcagtcaattgctttgaagattattttagaaagagaa
gaagaaattcgccaatttgagcctgaagaatactggagtattgcagctaattttcttaaa
aaacggaaaaaattcaaagcgtctttttatggtgtagatggtaaaaaaactaaactagca
actgctgaagaagttaaagctgtcactgatcgactagaaggtgatgcgtatactattact
aaaatcactaaaaaagaacgtaaacgaaatcctgcaaaaccatttactacaagtagctta
cagcaagaagcagccagaaaattgaattttagaacacgtaaaactatgatggttgcgcaa
cagttgtatgaggggatcgccttagggaaacaaggaacagtcggtttgattacctacatg
cgtaccgattcaactcgcttgtctaacactgctaaaaatgaagcagctagttttattgag
gagacgtacggagcagaatacgctattggctttaaagaaacatcaagtaaagaaaaagga
gctcaagatgctcatgaagcgattcgtccctctagtattttaagaactccagagtctgtc
aagcaatatttagataaggatcagtttaaattgtacaacttaatttggtctagggtagtt
gctagccaaatgacctctgccgttttagacactatgcgggtcaatttagaacaaaatggg
gttatgtttgttgccaatggttctaaaataaaatttcctgggtttatgaaagtttacatt
gaaggaaatgatgaaggcaaagaagaaaaagaaaatatcctaccagaattagacgagggt
gaagaagttaaagcagttgatttagaacgtaagcaacactttactcaaccaccggcacgt
tttagtgaggcaactttaattaaaacgcttgaagagaatggtgtaggacgcccttcaact
tatgcaccaacccttgaaactatccagagacgctactacgttaaattggtaagcaagcga
tttgaaccaacggaattaggtgaaatcgtaaatggtttgattgttgagtttttcccaagg
attgttgatatcaattttacggctcaaatggaagaagatttagataaaatcgcggaacat
gaagaacagtggaaagaggtcgttgatcgcttctataaaccttttgcaattgagttagat
tctgcagaggaaaatatggaaaaaatccaaatcaaagatgaaccagcgggttttgactgc
gaagagtgtggtcatgagatggttattaaattaggtcgctacggtaaattttatgcgtgt
agtaattttcctgattgccgtaatactaaagcaattgttaaagaaatcggtgtaaaatgt
cctacttgtaaaaaaggagaggtaatcgagcgtaaatcaaagaaaaatagattgttttat
ggttgcagtgattatcctgaatgtgagtttacttcatgggataaaccgattggtcgtgac
tgtccaaaatgttctcattatttagttgagaagaaaattaagggcggaaaacaagtttta
tgtagtgattgtgactacaaagaagatattcaaaaataa
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