Vagococcus intermedius: OL234_06840
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Entry
OL234_06840 CDS
T09229
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
vie
Vagococcus intermedius
Pathway
vie03030
DNA replication
vie03410
Base excision repair
vie03420
Nucleotide excision repair
vie03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OL234_06840 (polA)
03410 Base excision repair
OL234_06840 (polA)
03420 Nucleotide excision repair
OL234_06840 (polA)
03440 Homologous recombination
OL234_06840 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vie03032
]
OL234_06840 (polA)
03400 DNA repair and recombination proteins [BR:
vie03400
]
OL234_06840 (polA)
Enzymes [BR:
vie01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OL234_06840 (polA)
DNA replication proteins [BR:
vie03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OL234_06840 (polA)
DNA repair and recombination proteins [BR:
vie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
OL234_06840 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OL234_06840 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_polI_exo1
5_3_exonuc
HHH_2
Pyr_excise
DUF4320
HHH_5
nSTAND_NTPase4
Motif
Other DBs
NCBI-ProteinID:
WEG72700
UniProt:
A0AAF0CTJ3
LinkDB
All DBs
Position
complement(1468090..1470747)
Genome browser
AA seq
885 aa
AA seq
DB search
MPKNKLLLIDGNSIAFRAFYAVQNFESFKTKTGLHTNAVLFFNNMLESIMEKEKPSHVLI
AFDAGKTTFRHAFFDEYKAGRAKTPGEFKEQMPYIRELIEACGIKHYELADYEADDIIGT
LAKRVDPTEYDVVVLSGDKDLTQLASETIRVEVTSRGVSELVTYTPAFIKEKYGLEPMQI
VDMKGLAGDSSDNIPGVTRVGEKTALKLLHEYGSVENLYEHIDDLKQSKMKENLINDREQ
AFLSKKLATIDTNAPIEIVVDSLLYEGKELEKLVPFYREMEFKQLLNKLDTSQLDEAGES
LSDIQFEHVLDSADVTPEMFTDEMSFYIEILDKNYHTAEVQGVSWGSCDSLYVSQGDSVL
HSPLMQEWLEDKTRHKNVYDAKANLVLLHRYGIKLTGISFDSLLAAYLIDTNDKSEDLAE
VAFNHDYYELERDEAIYGKGAKIAIPEESIFFGHLARKVKALETIKPTLVKKLADKEQSE
LFYEMELPLSHVLAEMESTGIAVNAQRLQEMKQEFAVQLQAIETRIYEQAGEEFNINSPK
QLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIIEDILHYRQIMKIQSTYVEGLL
KVIHPNDGKIHTRYVQTLTQTGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPDWQIFSS
DYSQIELRVLADIAQDEHMREAFREDQDIHASTAMRVFGVAETSEVTPNIRRQAKAVNFG
IVYGISDYGLSQNLGISRVEAQEFIDKYFEKYPAIKTYMEEVVREAKDKGYVETLWHRRR
YLPDINARNFNLRTFAERTAINTPIQGSAADILKIAMIQMAKRLKAEKLEATMLLQVHDE
LVFEAPESEIPRLEKLVKEVMEQAVELSVPLKVDSSVGDTWYEAK
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgcctaaaaataaattattattaattgatggaaacagtattgcctttagagccttttat
gccgtccaaaattttgaatcatttaaaactaaaacgggattacatactaatgcggtcttg
ttctttaacaatatgttagagagcattatggaaaaggaaaaacctagtcatgttctaatt
gctttcgatgcagggaagaccacttttaggcacgctttttttgatgagtataaagcagga
cgtgctaaaacaccaggtgaatttaaagaacagatgccttatattcgggagttgatagaa
gcctgtgggattaagcattatgaattagcagattatgaagcagatgatattattggaaca
ctagccaaacgagttgatcctacagagtatgacgttgtcgttctttcaggagataaggat
ttaactcagctagcttctgagactattagagttgaggtgacctctagaggtgttagcgaa
ctcgtaacttacacgccggcctttattaaggaaaagtatggtttagagccgatgcaaatt
gttgatatgaaaggtctagctggagatagctcagataatatccctggtgtgacgagagtt
ggtgagaaaacagctctcaaactgttacatgaatatggttctgtggaaaatttatatgaa
catattgacgacttaaaacaaagcaagatgaaggaaaatttaattaatgatcgtgagcaa
gctttcttaagcaagaaattagcaacaattgatactaacgcaccaattgagattgtcgta
gacagtcttctatatgaaggaaaagagttagaaaaattggtccctttttatcgtgagatg
gagttcaaacaactcttaaataagctagatacaagccaactagatgaagcaggtgaaagt
ttaagtgatattcaatttgaacacgttctagatagtgctgatgtgacaccggagatgttt
actgatgagatgagtttctatatcgaaatcctagataaaaattatcatacagctgaagtt
caaggggtttcttggggcagttgcgacagtttatatgtaagtcaaggagacagtgtgtta
cacagtcctcttatgcaagaatggttggaagataagacacgtcataaaaatgtctatgat
gctaaagctaacttggtcttattgcatcgttatgggattaaattaacagggattagtttt
gatagtttattagcagcctatttgattgatactaatgataagagtgaggatctggctgaa
gtagcttttaaccatgattactatgaattagaacgagatgaggcaatttatgggaaaggc
gctaagattgcgataccagaagagtctattttctttggtcatctagctcgtaaagtgaaa
gctttagaaacgattaagccgaccttagtaaaaaaattggcagataaagagcaaagtgag
ctattttatgagatggagttacctttgagtcatgtattggcggagatggaaagtactggt
attgcagtcaatgctcaacgtttacaagaaatgaaacaagagtttgcagtccaactacaa
gcgattgaaacgcggatttatgaacaagcgggtgaagaatttaatattaattcaccgaaa
caattgggtgttatcttgtttgaaaaaatgggattgcctgtgattaaaaaaacgaaaaca
ggttactcaactgccgtggatgttttagaacaattaaaagaacaagcaccaattattgaa
gatatcttacattatcgtcaaattatgaaaattcaatcaacttacgttgaaggacttcta
aaagtaatccatccaaatgatggcaaaattcatacacgatatgttcaaacgttgactcaa
actggtcgtctaagttcagttgatcccaatttacaaaatattccggtacgtttagaagaa
ggacgtaaaattcgtcaagcttttgtgccaagtcatcccgactggcaaattttttcatca
gattactctcaaattgagttacgtgttttagctgatattgctcaagatgaacacatgcgc
gaagcatttagagaagaccaagatattcatgctagtacagctatgcgtgtctttggtgtc
gccgaaacatcagaggtgacgccaaacattcgtcgtcaagccaaggctgtcaattttggg
attgtttatgggataagcgattatgggttatcacaaaatcttggcattagtcgtgttgaa
gctcaagaatttattgataaatattttgaaaaatatccagcgattaaaacgtacatggaa
gaagttgtacgtgaagcgaaagataaaggatatgtggagactttatggcatcgtcgtcgt
tatctaccagatattaatgctcgtaattttaacttacgtacatttgctgagcggacagcg
attaacacgccaattcagggaagtgctgctgatattttaaaaattgccatgattcaaatg
gccaaacgtttgaaagcagaaaaattagaagcgactatgttattacaagtccatgatgag
ttggtttttgaagcacccgaatcagagatacctcgcttagaaaaactggtcaaagaagtg
atggaacaagctgttgaattgagtgtgccgctaaaagttgatagtagtgttggcgatact
tggtacgaagctaaatag
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