Vagococcus intermedius: OL234_07160
Help
Entry
OL234_07160 CDS
T09229
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
vie
Vagococcus intermedius
Pathway
vie03030
DNA replication
vie03430
Mismatch repair
vie03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OL234_07160
03430 Mismatch repair
OL234_07160
03440 Homologous recombination
OL234_07160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vie03032
]
OL234_07160
03400 DNA repair and recombination proteins [BR:
vie03400
]
OL234_07160
Enzymes [BR:
vie01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OL234_07160
DNA replication proteins [BR:
vie03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
OL234_07160
DNA repair and recombination proteins [BR:
vie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
OL234_07160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
DNA_pol3_a_NI
tRNA_anti-codon
HHH_6
RNase_H_2
Rv2179c-like
DNA_pol_A_exo1
HHH_3
DEDDh_C
tRNA_anti-like
Zn-ribbon_8
Motif
Other DBs
NCBI-ProteinID:
WEG72761
LinkDB
All DBs
Position
complement(1533261..1537598)
Genome browser
AA seq
1445 aa
AA seq
DB search
MSLNPRELFDKLLDQMGFQSDEKRLPAFSEGEVSKVVVHKKSRCWEFHLQFKNILPIEIY
TRLYQQLHHAFDGIAQVQLHVRTQDSNYDQEMLQSYWSYGLQQAQCNQAVVNGALKEQLP
FVEDDQLIILVENEGIIEYLKKQYLPEVEQAYQRFGFPKFRLIPKVNQEKAQANQQAFAE
RQQQQQVRMMEEAAAALEKNEQIKQQKKNEPVTLEGPIQLGRTINSDEVILPMSQIIDEE
RTVTVEGYVFDVEVRDLRSGRKILIVKITDYTSSFAVKKFSNNAHDEAVFEAIKKGQWLR
VRGSVQEDTFMKDLVMNARDLMEVKKAGRKDTAPADEKRVELHLHTNMSTMDGITGASDL
VAQAGAWGMPAIAITDHGGAQSFPDAHQAGKKHGVKILYGIEANIVDDGVPIAYNPEHLS
LTDATYIVFDVETTGLSAVYDTIIELAAVKMHKGNIIETFEQFIDPGHPLSETTISLTGI
TDEMVRGSKSEEEVLRLFREFCDQDILVAHNASFDMGFLNTSYEKYEIPEAPNPVIDTLE
LSRFLHPEWKSHRLNTLAKKYGVNLEQHHRAIYDSETTGQLCWIFLKKAQEEHGIQYHDE
LNEHVGEGDAYKRARPFHAIIMATTQAGLKNLFKLISMSNIDYYYRVPRIPRSQLTKLRE
GLIVGSACSGGEIFEAMMQKGIEEAKKRAKFYDYIEIMPKAVYAPLIEQELVKSESDLEE
IIGNLVKIADELDKPAVATGNVHYLNKTDSIYRKILVNSMGGANPLNRHSLPEVHFRTTN
EMLTEFSFLGEETAKRVVVTNSQLIASWCEEVTPVKTDLYTPKIEGSEQEITDLSYNEAK
RLYGDPLPDIVEKRLKKELDSIIGNGFSVIYLISQKLVHKSLKDGYLVGSRGSVGSSFVA
TMTGITEVNPLAPHYRCPKCQYTEFFEDGSVGSGFDLPEKPCPECGNRLFKDGHDIPFET
FLGFHGDKVPDIDLNFSGDYQPEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGYER
DNNLELRSAEIDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFSPIQFPADDQNSEWKT
THFDFHSIHDNVLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMRIFSGPQVLGVE
PDQIHSKTGSLGIPEFGTKFVRGMLEQTHPTTFAELLQISGLSHGTDVWLGNAEELIRKG
QTTLAEVIGCRDDIMVYLIHNGLEDGLAFKIMESVRKGKGIPDEWQAEMRAVGIAEWYID
SCLKIKYMFPKAHAAAYVLMALRVAYFKVYYPILYYAAYFSVRADDFDLVAMSKGKDAVK
ARMKEIMDKGMEASTKEKNLLTVLELCNEMIERGYKFKMIDLYKSDADNFVIDGDTLIAP
FRAVPSLGQNVAKQIIAARKEQEFLSKEDLANRGKVSKTLIEYMTENSVLDGLPDENQLS
LFDML
NT seq
4338 nt
NT seq
+upstream
nt +downstream
nt
atgtctttaaatcctagagagttatttgataaattactcgatcagatgggatttcaatct
gatgaaaagagactaccagctttttcagaaggggaagtttccaaagtcgttgttcataaa
aaaagtcgttgttgggaatttcatttacaatttaaaaacattttgccaatagagatatac
acccgtctctaccaacaattgcatcatgcttttgatggaattgcccaagtccaattgcat
gtgcgtactcaggacagtaactatgatcaagagatgttacagtcctattggtcatatggt
ttacaacaagcacaatgtaatcaagccgtagtgaatggggctttaaaagagcaattaccg
tttgttgaagatgatcaacttattattttggtagaaaatgaagggattattgagtattta
aaaaaacaatatctaccagaagtcgaacaagcttaccaacggtttggctttcctaaattt
cgtttaataccgaaagtaaatcaagaaaaggctcaagctaatcagcaagcttttgcagaa
cgccaacaacaacaacaagttcgtatgatggaagaagctgcagccgctctagaaaaaaat
gagcaaataaagcaacagaaaaaaaatgagccagtgaccttagaagggccgattcagtta
ggacgtacaatcaactcagatgaagttattttgccaatgagtcaaattattgatgaagag
cgcacagtcacagttgaagggtacgtttttgatgttgaggtaagagatttacgttcggga
cgtaaaatattaattgttaaaattacagattatacgtcgtcttttgcggtgaaaaaattc
tcgaacaatgctcatgatgaagctgtctttgaagcaatcaaaaaagggcagtggttgcgt
gttcgtggaagtgtacaagaagatacttttatgaaagacttagtaatgaatgcgcgagat
ttaatggaagtgaaaaaagctggacgaaaagatacagcaccagctgatgaaaaacgtgtg
gaacttcatttacatacaaacatgagtacaatggatggtattaccggagctagcgactta
gtagcacaagcaggtgcttggggaatgccggccatagcgatcacagatcacggtggtgct
cagagctttccggacgcccatcaagcagggaaaaaacatggggttaaaatattatatggg
attgaagctaatatagtagatgacggtgttccaatcgcttataatccagagcatctttct
ttaactgatgcgacttacattgtatttgacgttgagaccactggattatcagcggtttat
gatacgattattgaattagcagcagtcaaaatgcacaaaggaaatattattgagacgttt
gaacaatttattgatccaggtcatccattgtcagaaacaaccattagtttaacagggatt
actgatgagatggtccgtggttctaagtcggaagaagaagttttaagactatttcgtgag
ttctgtgatcaggatattttagtagctcataatgctagttttgacatgggatttttgaat
actagttatgaaaaatatgagattcccgaagcgcctaatccagttattgatacattggaa
ttatcacgtttcctacatccagagtggaagagtcatcgtttaaatactttggctaaaaag
tatggtgtcaatttagagcaacatcatcgagctatttatgattcagaaacgactggacag
ctgtgttggattttcttaaaaaaagctcaagaagagcatggtattcagtatcatgatgag
ttaaacgaacatgtcggtgaaggagatgcttataaacgagcccggccatttcacgccatt
attatggcaacgactcaagctggtttaaaaaatctctttaaattaatctctatgtcaaat
attgattattattaccgagtacctaggataccacggtcacaattaacaaaattacgtgaa
gggttaattgtcggatcggcttgtagtggcggtgagatttttgaggcgatgatgcaaaaa
ggaatcgaagaagctaaaaaacgtgccaaattctatgattatattgaaattatgcccaaa
gcagtctatgcccctttgattgagcaagaacttgtcaaaagtgagtcagatttagaagaa
attattggcaatttagttaaaatagctgatgaattagataaacctgctgttgccacgggg
aatgttcattatttaaataagacagattctatctatcgtaaaattttggtcaattcgatg
ggaggagcaaatcccttaaatcgtcattccttaccagaggttcactttagaacaacaaat
gagatgctaacagaattttcatttttaggtgaagagacggctaaacgagtggtcgtaacc
aacagccaattaatcgccagttggtgtgaggaagtcacaccggttaagacagatctttat
acacctaaaattgaagggtcggaacaagaaatcacagatttgagttacaatgaagcgaag
cgtttatatggagatcctttgccagatattgtagaaaagcgtctgaaaaaagaactggat
agtattattggtaatggcttttcagttatttatttgatttctcaaaagttagtgcataag
agtttgaaagatggttatttagtaggatctcgtggatcggtcggctcgagttttgttgcg
acgatgacaggaattaccgaggtcaatcctttagcaccacattatcgttgtccaaaatgc
caatatacggaattctttgaagatggttcagtagggtctggttttgacttgccagaaaaa
ccttgtcctgaatgtgggaatcgcctattcaaagacggtcacgatattcccttcgaaacc
tttttaggattccatggcgataaagtgccagatattgacttgaacttctcaggtgattat
caacctgaggctcacaattatacaaaagtactttttggtgaagagtatgtttatcgggca
gggacgattggaacagtagcggacaagacggcttatggttttgttaagggttacgaacgt
gacaataatcttgagttacgcagtgctgagattgaccgattggctaaagggtcaacaggt
gtcaagcgcacaacaggacagcatccggggggaattatcgttattcctgattatatggat
gtttatgatttctcaccaatacaatttccagctgacgatcaaaattcagaatggaaaacg
actcattttgatttccattcaattcatgataacgtcttaaaattagatattttaggacat
gatgatccaactgttattaggatgctacaagatctttctgggattgatcctaagacaatt
ccgacagatgatcctgaagtaatgcgaatcttttctgggccacaagtactaggcgtagaa
ccagatcaaattcactctaagacaggttctttaggaattccagagtttggaacaaagttt
gttagagggatgttagagcaaacccatccaacgacctttgccgaattattacagatttcc
ggtttgtctcatggtaccgatgtttggttaggcaatgcagaagaattaattcgtaaaggt
caaacaacgctagcagaagtaattgggtgtcgtgatgatattatggtttacttgatacac
aatggtttagaagatggtctagcatttaaaattatggagagtgttcgtaaggggaaaggt
atacccgatgagtggcaggcagaaatgagagctgttggtattgccgagtggtatattgac
tcgtgtttaaaaattaaatacatgttccctaaagctcatgcggcagcctatgtgttgatg
gcgttacgtgtagcatattttaaagtttattatccaattctttattatgcagcctatttt
tcggtgcgtgctgatgactttgacttagttgctatgtctaaaggcaaagatgctgtaaaa
gctcgcatgaaagagataatggataaagggatggaggcttccactaaagaaaaaaatctg
cttacagtcctagagttatgtaatgaaatgattgaacgtggttataaatttaaaatgatt
gatttatataaatcagatgcggataattttgttattgatggtgatactttgatagcaccg
tttcgtgctgttccaagtttaggtcagaatgtggccaaacaaattatagcagcacgaaaa
gaacaagaatttttatcaaaagaagacttggctaatcgtggtaaagtttcgaaaacactg
attgaatatatgacagaaaacagtgtcttagatggtcttcctgatgaaaaccagttatct
ttattcgatatgttataa
DBGET
integrated database retrieval system
