Vagococcus intermedius: OL234_09490
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Entry
OL234_09490 CDS
T09229
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vie
Vagococcus intermedius
Pathway
vie03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vie00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OL234_09490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vie03019
]
OL234_09490
03009 Ribosome biogenesis [BR:
vie03009
]
OL234_09490
Enzymes [BR:
vie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OL234_09490
Messenger RNA biogenesis [BR:
vie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OL234_09490
Ribosome biogenesis [BR:
vie03009
]
Prokaryotic type
rRNA helicases
OL234_09490
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
NAT10_TcmA_helicase
DeaD_dimer
CMS1
Motif
Other DBs
NCBI-ProteinID:
WEG73182
UniProt:
A0AAF0CUM8
LinkDB
All DBs
Position
complement(2039859..2041505)
Genome browser
AA seq
548 aa
AA seq
DB search
MKFEELGLVPELLSTIKSAGFEEATPVQAGTIPLALAGKDVIGQAQTGTGKTAAFGLPML
QKIDPSKRMVQGLVIAPTRELAIQTQEELFRLGKDKRIRVQAVYGGADIGRQIRTLKDGP
HIVVGTPGRLIDHINRKTLKLETVETLVLDEADEMLNMGFLEDIETIISKVPATRQTLLF
SATMPDPIKRIGVKFMKDPEHVAIKNKEMTANLIDQYYVRSKDFEKFDIMTRLLDVQTPE
LTIVFGRTKRRVDELARGLELRGYKAEGIHGDLSQQKRMSVLRAFKGGQLDILVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGLSVTFVTPNEMSYLNVIENLTKK
KMTPLRPPSQKEAMAGQIGAAIETIESQFEGANLEEYSAATADLVGKYSAEELAAMLIKS
VAKESSAEVPVKITPERPLPGGKGRGGNRSGNRNGGGNRGGNRSGGGRRDGNRSGGGRRE
GASRGGERRDGAGRDGERRDTGKRRSGSWDNKNKGSQNKKSDFKGQEGAKKSSPKKSKRD
FVIRTSNK
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttgaagaattaggattagtaccagaattattatcaacaattaaaagcgcgggg
tttgaagaagcaacgccagtacaagcgggaactatcccactagcattagcaggaaaagac
gtaattggtcaggcacaaacaggaactggtaaaacagcagcctttggtttaccaatgtta
caaaaaattgatccaagcaaacgcatggttcaaggtttagttattgccccaactcgtgaa
ttagctattcaaacacaagaagaattattccgtttaggtaaagataaacgtattcgtgtt
caagcagtttatggtggagctgacattggtcgtcaaatccgtactttaaaagacggtcca
catattgttgtggggacacctggtcgtttaattgatcatattaaccgtaaaacattaaaa
ttagaaacagttgaaacattagttttagatgaagcagatgaaatgttaaatatgggcttc
ttggaagatattgaaacaattatttctaaagtaccagctacaagacaaaccttattattc
tcagcaacaatgccagatccaatcaaacgtattggggttaagtttatgaaagacccagag
catgttgcgattaaaaataaagaaatgacagcgaatttaattgatcaatactacgttcgt
agtaaagattttgaaaaatttgacatcatgacacgcttattagatgttcaaacgccagaa
ttaacaattgtttttggtcggacaaaacgtcgtgttgatgaattagcccgtggtttagag
ttacgtggttataaagcagaaggtattcatggcgatttatctcaacaaaaacgtatgagt
gtcctacgtgcctttaaaggtggacaattagatattttagtggcaacagatgtagccgct
cgtggattagatatttcaggcgtgacgcatgtctacaactatgatattccacaagatcca
gaaagctatgttcaccgtattggtcgtacgggtcgtgctggtaaagaaggtttgtcagta
acctttgtaacaccgaatgaaatgagctatctaaatgttattgaaaacttaactaagaaa
aaaatgacacctttacgcccaccttcacaaaaagaagcaatggctggtcaaatcggcgct
gcgattgaaacaatcgaaagtcaatttgaaggtgctaacttagaagaatattcagcagca
actgctgatttagttggtaaatactcagcagaagaattagcagcaatgcttattaagtct
gttgcgaaagaaagttctgctgaagttccagttaaaatcacacctgaacgtccattacct
ggtggtaaaggtcgtggcggtaaccgtagtggaaatcgcaatggtggcggtaatcgtggt
ggaaatcgcagtggcggtggacgtcgtgatggcaaccgtagtggcggtggacgtcgtgag
ggtgctagccgtggtggtgaacgtcgtgatggcgctggccgtgatggtgaacgtcgtgat
actggtaaacgtcgtagcggcagctgggataacaaaaacaaaggcagccaaaataaaaaa
tctgattttaaagggcaagaaggcgcaaaaaaatctagtccgaaaaaaagtaaacgtgac
tttgtaatcagaacaagcaataaataa
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