Vagococcus intermedius: OL234_10095
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Entry
OL234_10095 CDS
T09229
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vie
Vagococcus intermedius
Pathway
vie03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OL234_10095 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vie03400
]
OL234_10095 (mfd)
Enzymes [BR:
vie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OL234_10095 (mfd)
DNA repair and recombination proteins [BR:
vie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OL234_10095 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
AAA_16
IstB_IS21
Alginate_exp
Motif
Other DBs
NCBI-ProteinID:
WEG73269
UniProt:
A0AAF0CUM7
LinkDB
All DBs
Position
complement(2144868..2148413)
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AA seq
1181 aa
AA seq
DB search
MSIVDIISKSQPVVEWIRQTETAKQQLVTGLTGSAKMLVMASLFQTKQNRTVIVTPNLYQ
ASNLLDDLRNVIPEEQLHLFPVEEMTAIEMSYSSPESLAERVATLSFLASKRPGVIVVPL
SGIRKIVPAPREWQGFVRELKVETEVELDSLLQELVLMGYQRQDMVGKPGEFSVRGSILD
IYPLTTDYPVRIDFFDNEIDSIRYFEADTQRSIETINRVIISPATDVILNGESLKEAADR
LEGHVMKHLVTLQNETDKQTFEKHFGGILSSWRSGHTTEYDRYYLDILYKKKHTILDYLT
KEDDICIDDYPRLLDAEKEMLVEEGEWLTLKLAELKVFPEQKLGIELRQTLKAVKSSVSF
FSLFQKGMGHLKFHALHHFQFRAMQQFFGQVDVLKVELARWEKRNDTVIFLASDEEKSRK
LEELFIDHDLSAVVTQPDTILKGTTQIMIGDLQSGFELPEEKLVVVTEKEMLQTVTKKRA
RKQTISNAERLKSYNELKPGDFVVHINHGIGQYIGMETLQMDGVHQDYMTILYQNNDKLF
IPVTQLDLIQKYVASESKAPKINKLGGSEWAKTRKKVSSKIEDIADDLILLYAAREAEKG
YAFSPDDSYQKEFEDAFPYSETEDQLRSIQEIKRDMEKERPMDRLLVGDVGFGKTEVALR
AAFKAVQDGKQVAFLVPTTILAQQHYETMLERFTNFPVRIGLLSRFRTKKQQTETMEELA
KGQIDIVVGTHRILSKDVEMQDLGLLIVDEEQRFGVKHKERLKQLRSQVDVLTLTATPIP
RTLHMSMLGVRDLSVLETPPANRYPVQTYVMEQNPGAIKDAVERELARGGQVFYLHNRVN
TIDQKVDELRQLLPEARIAFAHGQMTEVQLENVLLEFINHEFDVLVTTTIIETGVDIANV
NTLFVENADHMGLSTLYQLRGRVGRSNRVAFAYFMYEPDKVLNEVSEKRLQAIKDFTELG
AGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYTQMLSEAVARKQGKSEHDYKTSVEI
DVDIDAYIPSDYIGDERQKIEIYKRVRQLENQEMYEELEDDLFDRFGNYPDEVGYLLSIG
LIKMNGDYALIERISRSKNQLIVLLSPIGTKSYTIEQLLKALTATKLKADIGTKDDKMCL
KLSLPKGMSEAVWLLELSQFVTALRQEKYLSKKAKQTDEGQ
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgagtatagtagatattatttctaagtctcaaccagttgtagagtggataaggcaaact
gagactgctaaacaacaattggtaacaggtttgacaggttcagccaaaatgctagtcatg
gcgagcttatttcaaacgaagcaaaatagaacagtgattgtcacacctaatttataccaa
gcaagtaatttactagatgatctacgtaatgtgataccagaagaacaattgcatttattt
ccggtagaagagatgacagcaatcgaaatgtcttattcatcacctgagtcgttagccgaa
cgtgtcgcgacgctttcatttctagcgagtaagcgccccggggtgattgtggttcctctt
tcaggtatacgtaaaatagtgccagcaccgagagagtggcaaggctttgtcagagaatta
aaggttgaaactgaggtagagttagatagtttacttcaagaattagtcctaatgggatat
caacgtcaagatatggttggcaaaccaggtgaatttagtgtgagaggaagtattttagat
atttatcccctaacaactgattatcctgtaagaatagatttctttgataatgaaattgat
tctatccgctattttgaagccgatacacaacgttcaattgaaacgattaatcgagtgata
attagcccggcaactgatgttattctaaatggtgaatctttaaaagaggcggcagatcgt
ttagaaggtcacgttatgaaacatcttgtaactttgcaaaatgaaacagataaacagact
tttgagaaacattttggagggattttatctagctggcgttcaggacatacaactgaatat
gatcgttattatttagacattttatataaaaaaaagcatacaattttggattatctaaca
aaggaagacgatatttgtatagatgattacccaagattattagatgctgaaaaagagatg
ctagtagaggaaggcgagtggctgaccctaaagttagctgaattaaaagtttttccagag
caaaaattaggcattgagttacggcaaaccttaaaagcagtaaaaagttcggttagcttt
ttttccctttttcaaaaagggatggggcatttaaaatttcatgctttacatcacttccaa
tttagagccatgcaacaattttttggccaagtggatgttttaaaagttgagttggcacgt
tgggaaaaaagaaacgatactgtgatttttttagcttctgatgaagagaagagtcgtaag
ctcgaagagttatttattgaccatgacctatctgctgttgtgacacaaccagatactata
ttaaaagggacaactcaaattatgataggggacttacaatctgggtttgagttgccagaa
gaaaagttagtggtagtgacagaaaaagaaatgttacagaccgtcactaaaaaaagagct
agaaagcaaacaatttccaatgcagagcgtttaaagagttacaatgagctaaaaccaggt
gattttgttgtacatattaatcacgggattggtcagtatattgggatggagaccttgcaa
atggatggggttcatcaagattatatgactattttatatcaaaataatgataaattattt
attcctgtgacacaattagacttaattcaaaaatatgttgcttctgagtcgaaagctccg
aaaatcaataagcttggtggcagtgagtgggctaagactcgtaaaaaagtatcatcaaaa
attgaggatattgccgatgatttaatcttactctatgctgctagagaggcggaaaaaggt
tatgctttttcacctgatgatagttaccaaaaagagtttgaagatgcctttccttattca
gaaacagaagatcagctacgcagcattcaagaaattaagcgtgatatggaaaaagaacgt
ccgatggatcgtttattagtaggggatgtcggttttggaaagacagaagttgctttgaga
gctgcttttaaagcagtacaagacggcaagcaagttgcatttttagttccaacaactatc
ttagcacagcaacattacgagacaatgttagaacgatttactaattttccagtaagaatt
ggtttattaagtcgttttagaactaaaaaacagcagacagaaactatggaagaactagct
aaaggacaaattgatatcgttgtgggcacacatcgtattctttctaaagatgtggagatg
caagatttaggcttgttgattgttgatgaggagcaacgttttggcgtgaagcataaagaa
cgcctaaaacagttacgttctcaagttgatgttctgacattaacagctacgcctattccg
agaaccttacacatgtcgatgctaggtgtccgagatttatcagtcttagaaactccccca
gctaatcgttatccagtacagacctatgtgatggaacaaaatcctggcgcaattaaggat
gctgtcgaacgtgaactagcacgtggcggacaagtattttacttacataatcgtgttaat
acaattgaccaaaaagtagatgaattacgccaattattaccagaggctaggattgctttt
gctcatggtcagatgacagaagtacagttagaaaatgttttacttgaatttattaatcat
gagttcgatgtattggtcactacaacgattattgaaacaggggttgatatcgcaaatgtt
aataccttatttgtagaaaatgcggatcatatggggctatcaacgttgtatcaattacgt
ggacgagttggacgaagtaatcgggtagcttttgcttattttatgtatgaaccagacaag
gttttgaatgaggtaagtgaaaaaaggttacaggcgataaaagattttacagaacttggg
gcgggctttaaaattgccatgcgtgacttatcaattagaggtgcggggaatttactggga
gcgcaacaacacggctttattgattcagttggatttgatatgtatacacaaatgcttagt
gaagctgttgctcgtaagcaaggtaagtcggagcatgattataaaacgtctgtggaaatt
gatgtggatattgatgcctatattccttcagattatataggcgatgagcgtcagaaaatc
gaaatatataaacgtgtccgccaattggaaaatcaagaaatgtatgaagaattggaagac
gatttatttgatcgctttggaaattatccagatgaagtcggctatttattatctataggc
ttgattaaaatgaatggagattatgctttaatcgaacggattagtcgatcaaaaaatcaa
ttaatagtcttattaagtcctattgggacaaaatcttatactattgaacagcttttaaag
gctttaacagctaccaaattaaaggcagacattgggactaaagatgataagatgtgtcta
aaattaagtttaccaaaaggaatgagtgaagctgtttggttgctagaactgtcgcaattt
gtgacagcattgagacaagaaaagtatctctctaaaaaggctaaacaaacagatgagggt
caataa
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