Virgibacillus sp. 6R: BKP57_02560
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Entry
BKP57_02560 CDS
T04596
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vig
Virgibacillus sp. 6R
Pathway
vig03030
DNA replication
vig03430
Mismatch repair
vig03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BKP57_02560
03430 Mismatch repair
BKP57_02560
03440 Homologous recombination
BKP57_02560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vig03032
]
BKP57_02560
03400 DNA repair and recombination proteins [BR:
vig03400
]
BKP57_02560
Enzymes [BR:
vig01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BKP57_02560
DNA replication proteins [BR:
vig03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BKP57_02560
DNA repair and recombination proteins [BR:
vig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BKP57_02560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
HROB
SSB
Motif
Other DBs
NCBI-ProteinID:
API90830
LinkDB
All DBs
Position
complement(535977..539330)
Genome browser
AA seq
1117 aa
AA seq
DB search
MAYTHLQIRSSYSLLKSTITIEKLVKRAAELEYSALALTDEQVLHGAISFYKACQQHGIK
PIIGMTVLVGDSQTEAYEIIVLAKSNQGFHDLVKLSTWIQTQDQSFVPLEHFMPFTANCI
GILSLQHGVIQEQLRAKSFADANQHVSTYRACFGENDFYLGVESYGNGGDERTFFAEVKQ
FQKMYHDPVVAIHDVRYLNKKDVIAYDCLQAMKQQQLWDGNHIDVKWRNHHLCTEAEMRQ
FFSDWSETIDETTRIAEKCNLSFDFEKRHLPSFPLPEQEEAHPYLTAKCIKLLPQKYTEV
TAEIHQRLMYELSIIEQMKFSDYFLIVADFVDFAKTNNIVVGPGRGSAAGSLVAYVLGIT
DVDPTKYDLLFERFLNPNRKTMPDIDIDFSDVRRDEVMEYVQKKYGADHVAQIITFGTFA
ARSLMRELIKTMDINKQDASFVLRHIPVQSKRNLAQIVHESEELRNYIKRSVSLRQLFAV
AAVLEGIPRHISTHAAGIVISEAPLKEYAPLTSGTGTMYLTQYTMNDVEAIGLLKIDLLG
LRNLTLLEKVLQKIRFQTGQHISLKDIPQQDALTFSLLQQARTNGVFQLESQGMKQVLQE
LKPNEFEDIVAVNALYRPGPMDFIPTYIRRKHGLEKVTYLHPDLAPILQKTYGVLIYQEQ
IMQIAHRIAGFSLGKADILRRAVSKKQESKIEEQKSAFLKGCIQQGYSSSMANELFAWIV
RFSNYGFNRSHAVAYSIISYQLAYLKAHYPQAFFAELLSASMQQHQKLALYWKEMKELDL
TLLGPSINASFGKYAVEGKHIRMGLLQIKGIGNQAVTEIVRARKDRPFRNLFDFCLRVSL
KVINRPIIELLIMAGAFDDLYNNRASLLASIDQAMEQGELFGEFQEQGSFFANDLKLEGK
YANIEDFPQIKKLSHEKELLGIYISSHPVTAYRKLLQRAGYISLQRARKAGNGYKHQSGC
VIQFIRTIRTKRGDPMAFITISDETDEMEAVVFPELYRQVHRWWKEGMLVLVQGKLENRN
NRLQTLLSSVEILNETKLGDTCPGRLFIKLSSEDIEADLAKLKEIAFHFPGNTPVIVFQE
RLQQTYQLANDYDLHPSSRCLQRLRAYFGAEQVVLDK
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atggcttatacacacttacaaataaggagcagctatagcctgttaaagagcacaataacg
attgaaaagttagtgaagcgagcagcagaactagagtattctgctttagctctaacagat
gaacaagtattgcatggtgcaatatcattttataaagcatgtcaacaacatggaataaaa
ccaattattggtatgactgttttggttggagatagtcaaacagaagcttatgaaataatt
gttttggccaaatcaaatcaggggtttcatgatcttgttaaactaagtacatggattcag
acgcaggaccagtcttttgtaccactggaacatttcatgccattcacagcaaattgtatt
ggtatactttctttacagcatggcgttatacaagaacaactgcgggcgaaatcatttgct
gatgcaaatcagcatgtatcaacgtatcgagcttgttttggggaaaatgatttttattta
ggggtagagtcgtatggaaatggtggagacgaacgaactttttttgcagaggtaaaacaa
tttcagaaaatgtatcatgacccggtagttgctattcatgatgttcgttaccttaataaa
aaggacgtgattgcatatgactgtttacaagcaatgaaacaacaacagctttgggatggc
aatcatatagatgtaaagtggcgtaatcatcatttatgtacggaagcggaaatgaggcaa
tttttctctgactggtcggagacaatcgatgaaaccaccagaattgctgagaaatgtaat
ctcagcttcgattttgaaaagcggcacctcccttcctttcctttgccagaacaggaagag
gcacatccatatttaaccgcaaaatgcattaaacttttgccgcaaaaatatacagaagta
actgctgagattcaccagcgtttaatgtatgagctttccataattgagcaaatgaaattt
agtgattactttttaattgttgcggattttgtggactttgccaagacaaacaatattgtt
gttggaccgggaagaggatcggcagcaggatctttagtagcttatgtattaggaattaca
gacgttgatccaactaagtacgatttattatttgagcgattccttaatccgaacagaaag
acaatgcctgatattgatattgatttctcagatgttcgccgagatgaagtgatggagtat
gtgcaaaaaaaatacggagcagaccacgtagcacaaattattacgtttggaacatttgct
gcccgttctttaatgagagagcttatcaaaacgatggatattaacaaacaagatgcgtca
tttgtgttacgccatattccggtacaatcaaaaagaaatcttgcgcagattgttcatgag
tctgaagagttaagaaattatattaaacgttcagtctctttacggcagttatttgcggta
gctgctgtattggaagggattcctagacatatttcgacacatgcggctggtattgttatt
tcagaagctccgttaaaggagtatgcgccgttaacttccggaaccggaacaatgtattta
acgcaatatacaatgaatgatgtagaagcgatagggctattaaagattgatttgttaggc
ttaaggaacttaacacttttggaaaaggtactacaaaaaattcgttttcaaactggacaa
cacatttctttaaaggatattcctcaacaagatgcgttaaccttttcattattacagcag
gctagaacaaatggtgtgtttcaattggagtctcaagggatgaagcaagtgttgcaagaa
ttgaagccaaatgaatttgaggatatcgttgcagttaatgcattatatcgtccaggcccg
atggattttattcctacttatattaggagaaaacatgggctagaaaaagttacttacctg
catccagatcttgcgcctattttacagaaaacgtacggtgtgttaatttatcaagaacaa
attatgcaaatcgctcatcgaattgctggtttttcgctcggaaaagcagatattcttcga
agggctgttagtaaaaagcaagaaagtaaaatcgaagagcaaaagtctgcttttctaaaa
ggttgtatccagcaaggatatagttcatcaatggctaatgaattgtttgcatggatcgtt
cgtttttccaattatggctttaaccgaagtcatgctgtggcgtacagcattatctcttat
caacttgcctatttgaaagctcattacccacaagcattttttgcggagttactcagtgct
tctatgcaacagcatcaaaagctggcattgtattggaaagaaatgaaggaactggactta
actttactgggaccttctatcaatgccagctttggaaagtacgcagtggaaggaaagcat
atccggatgggcttgctgcaaattaaagggataggaaatcaggctgttactgaaattgtt
cgcgcgcgtaaagaccgcccctttcgaaatttgttcgatttttgcttgcgtgtatcgctt
aaagtaattaaccgtcccattatcgaattactaattatggctggggcgtttgatgatcta
tataataatcgtgctagtttattagcttccattgaccaagcaatggaacaaggtgaatta
ttcggtgagtttcaagaacagggaagcttctttgccaatgatcttaagttggaagggaaa
tatgctaatatagaggattttccgcaaatcaagaagctttctcatgaaaaagaattactc
ggtatatatatatcgagccaccctgttactgcttaccgtaaattattacagcgcgcaggg
tatatatcattacaaagagcaagaaaagcggggaatggctataagcatcaaagtggctgt
gtcattcaattcattagaactattcgtactaagcgtggtgatcccatggcttttattacc
attagcgatgaaacggatgagatggaagcagtcgtctttccagaattatatcggcaagta
catcgctggtggaaagaagggatgctcgtattagtacaagggaagctagaaaacagaaat
aataggctacaaacattattgtcatctgtagaaattttaaatgaaacgaaactaggtgat
acctgccctggtcgtttatttattaaattatcaagtgaagatatagaagctgatttagcc
aagttaaaggaaatagcttttcatttcccggggaatacccctgtcattgtttttcaagaa
aggttacaacaaacatatcaattagccaatgattatgaccttcatccaagttcacgatgt
ttacaacgtctacgcgcctattttggggcggagcaagttgtcttggataagtaa
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integrated database retrieval system
