Virgibacillus sp. 6R: BKP57_08625
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Entry
BKP57_08625 CDS
T04596
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vig
Virgibacillus sp. 6R
Pathway
vig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKP57_08625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vig03019
]
BKP57_08625
03400 DNA repair and recombination proteins [BR:
vig03400
]
BKP57_08625
Enzymes [BR:
vig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BKP57_08625
Messenger RNA biogenesis [BR:
vig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BKP57_08625
DNA repair and recombination proteins [BR:
vig03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BKP57_08625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
API91888
LinkDB
All DBs
Position
1937705..1939840
Genome browser
AA seq
711 aa
AA seq
DB search
MGVREEKLLQTYFGYQHFRPGQKETIDFIINGKNILAVMPTGGGKSLCYQIPGLALEGTA
IIISPLISLMKDQVDALQALGVTATYINSTLSPEQQQTCLRDISLGRYKFVYVAPERFES
SFFMRVLRRIRISLIAFDEAHCISQWGHDFRPSYRSIIPQLQKLPRQPVVIALTATATTE
VIQDIQQQLHIENVVNTGFERENLAFHVVKGKAKRNYIASFLNERKSESGIIYTATRKQT
DALYDQLKAQGYSVAKYHAGLTELERKRAQSAFIHDEKQLMIATNAFGMGIDKSNVRFVI
HYAMPMNIESYYQEAGRAGRDGEASDCILLFSPQDIQLQKFLIEQSNMDEPGKQAEYRKL
QAMTNYCHTHSCLTAYILDYFHASSETKCGRCSNCVERQEKVDMTEEAQKILSCVKRMGE
QFGVGMTAKVLKGSKDKKIKQFRLHTLSTYGILSAYTEKELTEWIQFLIAEQLLATEEGK
FPTLKLNQQSVDVLKGKRKVWMFTAPIPANETADYHEDLFTALRQLRKQLAEEQNVPPYI
LFSDATLKELSRYFPTTKEAMLLVKGVGERKFDQYGEAFLTVIQKWREEHPDVQKVIPIQ
EPRPAKKSVHKQDDRPSHLISYELFQSGKAIKDIVAIRELSAQTIENHLFKAFKEGYPIA
WGVFFTSQEEEAILTARKELKEPKLKPLKESLPDTFDYTKIKAVLTKNGYL
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtacgtgaagaaaaactattacaaacctattttggttaccaacattttcgtcca
ggtcaaaaagaaacgattgactttattataaatgggaaaaacattcttgctgttatgccc
acagggggtggaaagtcactttgctaccaaattcccgggttagctttagaaggaaccgcc
attattatttccccgctcatctcattaatgaaagatcaagtagatgcattgcaagcttta
ggagttacggctacgtatattaatagtactttatctccagagcaacaacagacctgttta
cgagatatttcgttagggagatataagtttgtatatgtggctcccgaacgatttgaatct
agcttttttatgcgtgtgttacgccgcatacgaatatccttaatagcttttgatgaagcc
cattgtatttctcaatgggggcatgattttcgccccagttatcgctcaatcattccgcag
ttgcaaaaactcccccgtcagccagtagtgatagcattaacggcaacagcaactacagaa
gtgattcaagatattcagcagcaattacatattgaaaatgtggtgaatacaggttttgaa
cgggaaaacttagcgtttcatgtcgtaaaaggaaaagctaagcgcaattatattgcttct
tttttaaacgaacgaaaatcagaatctggcattatttatacagctacaagaaaacagaca
gatgcgctttacgaccagttgaaagctcaaggttattctgtagcaaagtatcatgctggt
ttaacggaattggaaagaaaaagagcacaatctgcctttattcatgacgaaaaacagcta
atgatagcaacgaatgcgtttggaatgggaattgataaatcaaacgttcgttttgtcatt
cattatgccatgccgatgaatattgaatcatactatcaggaagcaggcagagcaggcaga
gatggagaagcaagtgattgtattctgttattttcaccacaggatattcagttgcaaaaa
tttctaattgaacaatccaatatggacgaacctggtaaacaagcagagtaccgaaaattg
caagcaatgaccaattattgccacacacatagctgcttaacagcttatattctagattat
ttccatgcttcctccgaaacgaaatgtgggcgttgcagtaactgtgtagagcgtcaagag
aaagtcgatatgacagaagaagcgcaaaaaattctctcctgcgtaaaacgaatgggcgaa
cagtttggcgttggaatgactgccaaagtactgaaaggctccaaagataagaaaatcaaa
caatttcggttgcatactttatccacatacggcattctttccgcctatacagaaaaggag
cttaccgaatggatccagtttttaattgcagagcaattgttggcgaccgaagaaggaaaa
tttcctacactaaaactgaatcagcaatctgtcgacgttttaaaggggaaaaggaaagtc
tggatgtttaccgcccctattccggcaaatgaaacggcggattatcatgaagatttattt
actgctctaagacaattacgaaaacaactggctgaggaacaaaatgtaccgccctacatt
ttattttcagatgccacgttaaaggaattaagcagatattttccgactacaaaagaagcg
atgttattggttaaaggggttggcgaaagaaaattcgatcaatatggggaagctttttta
accgttattcaaaaatggcgcgaggaacatcctgacgtacaaaaagtgattccgattcaa
gagccaagaccagcaaagaagtctgttcacaaacaggatgaccgaccaagccatttaatc
agttatgagctatttcaatcagggaaagcgatcaaagacattgtagctattcgcgagctt
tctgcccaaaccattgaaaatcatttatttaaagcctttaaggaagggtacccgatcgca
tggggagtatttttcacttctcaggaagaggaagccattttaactgctcgcaaagaatta
aaagaaccgaagctaaaacctttaaaggaatcccttccagacacatttgattatacgaaa
atcaaggctgtattaacgaaaaatggttatttataa
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