Vibrio sp. HB236076: AB0763_03225
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Entry
AB0763_03225 CDS
T10847
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
vih Vibrio sp. HB236076
Pathway
vih02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vih00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AB0763_03225 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vih03021
]
AB0763_03225 (rpoD)
Transcription machinery [BR:
vih03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AB0763_03225 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Cwf_Cwc_15
TMPIT
Vfa1
Motif
Other DBs
NCBI-ProteinID:
XDK25672
UniProt:
A0AB39HE06
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Position
1:complement(721758..723647)
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AA seq
629 aa
AA seq
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MDQNPQSQLKLLVIKGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAP
DADDLALNDDNNITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQSSVAEYPGTIPYILEQFDKVQAEELRLTDLVSGFVDPDADDAAAPTA
THIGSELSETDIEDDELKSRKKDDDSDDDDEDEDSDNDDNEDEEETGIDPELALEKFTQL
RNTFQNYQLSVNEHGSDAPKSTIARELLLDVFREFRLTPKQFDYLVNELRTSMDRVRTQE
RLIMRATVEYGKMPKKSFIALFTGNESTEAWLDEVLASDKPYADKIRRYEDDIRRSIAKL
KSIEEETSLTVQSIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDL
IQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLN
RISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIE
DTTLELPLDSATATSLKLATKDVLSGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTR
ERIRQIEAKALRKLRHPSRSETLRSFLDE
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaatccgcagtcacagctaaaactcctagtcatcaagggcaaagagcaaggc
tatctgacctacgccgaagtcaatgaccacctacccgctgaaatcgtcgattcagaacag
gtagaagacatcattcagatgatcaatgacatgggcattaaggtcgtagaaaccgcccca
gatgccgatgatcttgccttaaacgatgataataacatcacagatgaagatgccgccgaa
gctgctgctgcagcactttctagtgtagaaagtgaaattggccgcacgaccgatcccgtt
cgcatgtacatgcgtgaaatgggtaccgttgaactgttaacccgcgaaggcgaaatcgac
atcgctaaacgcatcgaagacggtatcaaccaagttcagtcgtcggttgctgaataccca
ggtacgattccatacatcctagagcaatttgataaggtccaagccgaagaattgcgtctt
acggatctggtttctggctttgttgaccctgatgctgacgatgctgctgcgccaaccgca
acacacatcggctctgagttgtctgaaaccgacatcgaagacgacgagctaaaatctcgt
aaaaaagacgatgatagcgacgacgacgatgaagatgaagacagcgacaacgacgataac
gaagatgaagaagaaaccggtattgatcccgagcttgcgcttgagaaatttacccagctt
cgcaacaccttccaaaactaccagttgtcggtgaatgagcacggctctgacgcacctaaa
tcgacgatcgcccgcgaattgttattggacgttttccgcgagttccgcctaacgccaaaa
caatttgattacttggttaacgaattgcgcacctcgatggatcgcgttcgtacccaagag
cgtttgatcatgcgtgctacggttgaatacggcaaaatgccgaagaaatcgttcatcgcc
ttgtttaccggtaatgagtcgacggaagcttggcttgatgaagtcttagcgtcagacaaa
ccttacgccgacaagatccgccgttatgaagacgacattcgccgctcgattgccaagtta
aaatcgattgaagaagaaacgtctctaacggtacaaagcattaaagacatcagccgtcgt
atgtctatcggtgaagccaaagcccgccgtgcgaaaaaagagatggttgaagcgaacttg
cgtttggtgatttcgattgccaaaaagtacaccaaccgcggtctacagttcttggatttg
attcaagaaggtaacattggtttgatgaaggcggtggataagtttgaataccgtcgcggt
tacaagttctcgacttatgcaacatggtggatccgtcaggcgattactcgttcgattgct
gaccaagcgcgtacgattcgtatcccggtgcacatgattgagacgatcaacaagctaaac
cgtatctctcgtcaaatgctacaagaaatgggtcgtgagccattgccagaagaattggca
gagcgcatgcaaatgcctgaagacaagatccgtaaggtattgaaaatcgcgaaagagcct
atctctatggaaaccccaattggtgatgatgaagattctcatcttggtgatttcattgaa
gataccacgcttgagctgccgttagattctgcgacggcaaccagcctcaagttggcaacc
aaagacgttctttctggcctaacgccacgtgaagcgaaagttctgcgcatgcgttttggt
atcgatatgaataccgatcacacgctagaagaagtgggtaaacagtttgatgtaacccgt
gagcgtattcgtcagattgaagcgaaagccttgcgtaaacttcgtcaccctagccgttca
gaaactctgcgcagcttcttagacgaataa
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