Vibrio sp. HB236076: AB0763_05580
Help
Entry
AB0763_05580 CDS
T10847
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vih Vibrio sp. HB236076
Pathway
vih03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AB0763_05580 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vih03400
]
AB0763_05580 (mfd)
Enzymes [BR:
vih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AB0763_05580 (mfd)
DNA repair and recombination proteins [BR:
vih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AB0763_05580 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
ERCC3_RAD25_C
UB2H
Glyco_tran_WecG
RecG_dom3_C
T1R_D3-like
AAA_30
Motif
Other DBs
NCBI-ProteinID:
XDK26109
UniProt:
A0AB39HIP7
LinkDB
All DBs
Position
1:complement(1266480..1269968)
Genome browser
AA seq
1162 aa
AA seq
DB search
MTQSILPALPAYQGAGNKRQLGQLPGSSAAFAIADIANHYSGHSVVVVADVQTAQRLQDE
ARQFSHAPVTLFPDWETLPYDNFSPHQDVISERIAQLYRLPEQTSGITIVPVTTLLQRQS
PRSFLLTHTLMVKRGQERPLETLKSQLVDAGYRHVEQVFGPGEYASRGSLLDLFPMGSQH
PYRIDFFDNEIDTIRTFDPETQRSFDEIDQIELLPAHEFPTNNEAIEAFRIRWRAQFDAR
REPESVYMQVSKGTWPAGIEYWQPLFFDQTETLFDYFPDNSQLLLFGDVENAVDVFLSDV
QYRFEQKKIDPLRPLLSPDQLWLDKDALFVHLKRFDQLRLNQEPITEKPGRQNAPFQPLP
NIASQAKSKAPFEPLRQFIEQHRLEYPSGKIIFSVESPGRREALLELLQPVKIRPQPVEN
IENALANEGTFYIILGGSEQGFIFGSAQHLLICESDLLGERIVSSRGKKAKKNTSTDSVI
RHLAELTPGQPVVHLDHGIGRYLGLQTLEAGGLKTEYVTLEYQDDAKLYVPVASLHLISR
YSGGAEESAPLHKLGGEAWAKARRRAAEKVRDVAAELLDVYAKRELKPGHAFALDRGQYA
TFKSTFPYEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNNKQ
VAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDILVGTH
KLLSSELRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMR
DLSIIATPPARRLAIKTFVRERDDSVIREAILREIMRGGQVYFLHNQVETIEKVAQDLSQ
LIPEARVTIAHGQMRERELEKVMNDFYHQKFNLLVCTTIIETGIDVPSANTIIMDRADHL
GLAQLHQLRGRVGRSHHQAYAYLLTPPPKALTKDALKRLEAIASLEDLGAGFTLATHDLE
IRGAGELLGDEQSGQIQSVGFNLYMEMLDEAVESLKQGKEPSLDELLKQQTEVELRLPAL
LPDDYVPDVNMRLSMYKRIASIAQFDELADIKVELIDRFGLLPDAAKNLLAITEIKITAA
QLKIKRIEAYDKGGFIEFYPDADINPAYLVTLLQSKSQIYAMDGPTKLKFSQPLVDRRKR
LQFVKQQLEEFQQNRIPSAVSS
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgacccaatcgattttaccagcattgcccgcctaccagggtgccggcaataaaagacag
ctaggacaattgcctggctcttcagccgccttcgcgattgccgacattgccaaccactac
tctggccacagcgtggtcgtggtcgccgatgtacaaacggcgcagcgcctacaagacgag
gctcgccagtttagccatgcaccggtcaccctttttcccgattgggaaacgttgccttat
gacaacttctcgccccaccaagacgtaatctctgagcgcatcgcacagctttaccgctta
ccggaacaaacctcggggatcaccatagtcccagtcacgaccttattacaacgtcaatcg
ccacgctcatttttgctcacgcacactctgatggttaaaagagggcaagaaaggccactt
gaaacgttaaaaagccaattggttgacgctggctaccgacatgtggaacaggtgttcggc
ccaggtgaatacgccagtcggggctcgttactcgacctttttccgatgggaagccaacat
ccttatcgaattgatttttttgacaatgaaatcgataccattcgtacctttgacccagaa
acacaacgcagtttcgacgaaattgaccaaattgagttactgcccgctcatgagtttccc
accaacaatgaagcgatagaagcgtttcgaatccgctggcgagcacaatttgacgcgcgt
cgagaacctgaatccgtctatatgcaagtcagtaaaggcacttggcccgcaggtattgaa
tattggcaaccactgttttttgaccaaaccgagaccttatttgactattttccggataac
agccaactgttgctgtttggcgatgtcgaaaacgccgtagacgtctttctctcggacgtc
caataccgttttgaacaaaaaaagattgacccattaagacccctactgtcaccggatcaa
ttgtggcttgataaagatgcgttgtttgtccatcttaaacgctttgatcaattgagatta
aatcaagagcccatcacagaaaaaccgggccgccaaaacgcgccttttcaaccgctacct
aacatcgcatcacaagcgaaaagcaaagcgccatttgagccattgcgacaatttatcgaa
cagcatcgattggaatacccaagcggaaaaattattttctccgttgaatcccctggtagg
cgagaagcattacttgaacttttacaaccggttaaaattcgccctcaaccggtagaaaac
attgagaatgccctggcaaatgaggggactttttacattattttgggtggcagtgaacaa
gggttcatctttggcagtgcacaacatttactgatctgtgaaagtgatttactcggtgag
cgaattgtttcctcgagagggaaaaaggcgaaaaaaaacacttcaacggattcggttatc
cgccatttagccgaattgacacctggccaacctgtggttcacctcgaccatggtatcggt
cgctacctcggcctacaaaccttagaggcaggcgggttaaaaaccgaatacgtcacgctc
gaataccaagatgacgcaaaactctacgtgccggtggcatcgctgcacctcatcagtcgc
tattccggcggtgctgaagaatcagcgccgctgcacaaactcggtggtgaagcatgggct
aaagcccgtcgccgagccgctgaaaaagtgcgcgatgttgccgcagagcttttggatgtc
tacgccaaacgcgagctaaaacccgggcacgcctttgcgcttgaccgcggccaatatgcc
acatttaagtccacttttccttacgaggaaaccgatgaccaagccatggcgattaacgca
gtgctctcggatatgtgccaagccaaagccatggaccgcttggtgtgtggtgatgtcggc
tttggcaaaaccgaagtcgccatgcgcgctgcgtttgttgccaccgataacaacaaacaa
gtcgcggtcttagtcccgacaactttgttggctcaacagcactttgaaaactttcgcgac
cgttttgccaatttaccgatacgagtcgaagtcttgtcccgcttcaaatcagcaaaagag
caaaaagtcatcttacaagatgtcgctgacggcaaagttgatattttggtcggcacgcat
aagctgttatcttctgagttgcgctttgccgacttgggcttgttaattgttgatgaggag
caccgatttggggtgcgacaaaaagaaaaagtcaaagccatgcgcgctgatgtcgatatt
ctcacgttaacggcaacccccattcctcgtactctcaatatggccatgagtggtatgcgt
gatctttcgatcatcgcaacgcctcctgctcgacgtttggctatcaaaacctttgttcgc
gaacgtgatgacagtgtgatccgtgaagccatattgagagaaatcatgcgtggtggccaa
gtgtactttttgcacaaccaagtcgaaaccattgaaaaagtcgcacaagatttaagccaa
ctaatccctgaggcccgtgtcacgattgctcatggtcaaatgcgtgaacgtgaactggaa
aaggtgatgaatgatttctaccatcaaaaattcaacttactggtgtgcacaaccattatt
gaaactggtattgatgttccttcggctaacaccatcatcatggacagagccgatcacctt
ggactggctcagctgcatcaactgcgtggacgagttggacgctcgcatcaccaagcctat
gcctacttactcaccccgccaccaaaagcattgactaaagatgcgttaaaacgcttagaa
gccattgcatcacttgaagatctcggcgctggttttacgctagcaacccacgatttagag
atccgtggtgccggtgagttattaggtgacgaacaaagcggtcaaattcaatcggtgggc
tttaatctttatatggaaatgcttgacgaggccgttgagtcactcaaacaaggcaaagag
ccttcccttgatgagcttcttaagcaacaaacggaagtcgagttgcgtttaccagcatta
ctgcccgatgattatgtccccgatgtgaatatgagactttcaatgtataaacgcattgcc
agtattgcgcagtttgatgaattagccgatattaaagtagagctcatcgatcgctttggc
ctattacctgatgcagcaaagaatttgttggccattacagaaataaaaattaccgcagca
cagcttaaaattaagcggatagaagcctatgataaaggtggattcattgagttttatcca
gacgctgacataaacccagcctatctggttacactattgcaatctaaatcacaaatctat
gcgatggatggcccaacgaaactgaagttttcacaacctttagtggatcgccgcaaacgc
ttacaatttgttaaacaacaattagaagaatttcaacaaaaccggatcccatcggcagta
tcatcatga
DBGET
integrated database retrieval system
