Vibrio sp. HB236076: AB0763_05830
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Entry
AB0763_05830 CDS
T10847
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vih Vibrio sp. HB236076
Brite
KEGG Orthology (KO) [BR:
vih00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vih03032
]
AB0763_05830 (topA)
03400 DNA repair and recombination proteins [BR:
vih03400
]
AB0763_05830 (topA)
Enzymes [BR:
vih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AB0763_05830 (topA)
DNA replication proteins [BR:
vih03032
]
Prokaryotic type
DNA Topoisomerases
AB0763_05830 (topA)
DNA repair and recombination proteins [BR:
vih03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AB0763_05830 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
XDK26157
UniProt:
A0AB39HE00
LinkDB
All DBs
Position
1:1327820..1330438
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AA seq
872 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGKDFVVKSSVGHVRDLPTSGQSTGQKAAPISTKGMSAEE
KARVKKEKDRKALVKKMGIDPYHDWEANYQILPGKEKVVNELKKLAKDADCVYLATDLDR
EGEAIAWHLREIIGGDEDRYKRVVFNEITKNAIQQAFEKPGELNMDGVNAQQARRFMDRV
VGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREINAFIPEEYWDIHANTKTKNQAPF
RLLVAQKEGKAFKPTSEEQTKASLAVLEKSDFEVCKREDRPTQSKPSAPFITSTLQQAAS
TRLSFGVKKTMMLAQRLYEAGYITYMRTDSTNLSKEAVESLRNYIDNEFGKAYLPESPLV
YGSKENAQEAHEAIRPSSVEVAAADLKGVDADAVKLYQLIWNQFVACQMTPARYDSTTIS
VKADEYTLKAKGRILKFDGWTRVQRPLGKNEDEILPEVKVGELLTLENLEPKQHFTKPPA
RFTEAALVKELEKKGIGRPSTYASIISTIQDRGYVKVDQRRFYAEKMGEIVTDRLDKSFS
DLMNYDFTARMEQKLDQIAEGDVVWKKVLNDFFSDFTQDLEQADKDESEGGMSLNHIVMT
DIECPTCSRQMGIRTASTGVFLGCAGYALPPKERCKTTINLGDEEGIINVLEEDVETAAL
RAKKRCPICETAMDAYLIDDKRKLHVCGNNPNCEGHVVEYGEFKVKGYDGPVVECDKCGS
DMVLKNGRFGKYMGCSNEECKNTRKILRNGEIAPPKEDPVHLPELECEKSDAYFVLRDGA
SGLFLAASTFPKSRETRAPLVSELVRFKERISPKFHYLTEAPQQDPDGKPTVVRFSRKTK
ENYVRSEEGGKPTGWSALFEDGKWQVIDKRKK
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgcttgttatagtggagtctcctgccaaggcgaaaacgatcaataaatac
ctgggtaaggattttgtcgttaagtcgagcgtcggccatgttcgtgatcttccaacatcg
ggtcaaagtacagggcaaaaagcggcacctatttctaccaagggcatgagtgcagaagaa
aaagctcgcgtcaaaaaagaaaaagatcgcaaagccctagtaaaaaaaatgggtattgac
ccatatcatgactgggaagccaattaccaaatcttgccgggcaaagaaaaggtggtcaat
gagctaaagaaattagccaaagatgctgattgcgtttacctcgcaaccgatttggaccgc
gaaggggaagccattgcatggcacttgcgcgagatcattggtggtgatgaggaccgttac
aagcgtgtggtatttaacgagatcacgaaaaacgcgattcagcaggcctttgagaagcct
ggtgaactcaatatggatggtgtcaatgctcaacaagctcgccggtttatggatcgcgtt
gttggctttatggtgtcaccattactttggaaaaaagtcgcccgtggtttgtccgctggg
cgagtacaatcggtagccgtcaaattgctcgtcgagcgtgagcgtgaaattaatgcgttt
attccagaagagtattgggatattcacgctaatacaaaaacgaaaaaccaagcgccattt
cgtttacttgttgcccaaaaagagggcaaagcgtttaagccgacaagcgaagaacaaacc
aaagcctcattagcggtattagaaaaatctgactttgaggtgtgtaagcgcgaagacaga
cccacgcaaagtaaaccatctgcgccttttattacctcaaccttgcaacaagccgcgagt
acgcgtttgagtttcggggttaaaaagaccatgatgttagcgcaaaggttgtacgaagcg
ggttatattacttatatgcgtacggattcgaccaacttgagtaaagaggctgtcgagtcg
ctgcgaaattacatcgataatgaattcggtaaagcgtatttacctgagtcgccattggtt
tatggcagtaaagagaacgcacaagaggcgcatgaagcgattcgcccttcaagtgtggaa
gtggctgccgctgatttaaagggtgtagacgccgatgcagtgaaattatatcaattgatc
tggaatcagtttgttgcttgtcaaatgacacccgcgcgttacgactctaccaccatcagc
gttaaagccgatgaatatacgttaaaagccaaaggcagaattctaaaatttgatggttgg
actcgcgtgcagcgcccactgggtaaaaatgaagatgaaattctacctgaagtgaaagtc
ggtgagcttctgaccttagaaaatttggagcccaaacagcacttcaccaaacccccagct
cgttttactgaagcggctttagttaaagagcttgagaaaaaaggcattggtcgtccttcg
acttacgcgtccatcatttcgaccatacaagatcgcggctacgttaaagttgaccagcgt
cgtttttatgctgaaaagatgggcgagattgtgacggaccgcttagacaaaagctttagc
gatctcatgaactatgactttacggcgcgtatggagcaaaagttagaccaaattgctgaa
ggagacgtggtttggaaaaaagtgctcaatgacttctttagtgattttacccaagactta
gagcaagccgataaagacgaatctgaaggtgggatgtcgttaaatcacattgtgatgacg
gatattgagtgtccaacctgttcccgccaaatgggtattcgaactgcgtcaacaggggtt
ttcttaggttgtgctgggtacgcactgcctcctaaagagcgctgtaaaacgacgattaac
ctcggcgatgaagagggcattattaatgtgctcgaagaagatgttgaaacggcggcatta
cgagcaaaaaaacgctgtccgatttgtgaaacggcgatggacgcgtatcttattgatgac
aaaagaaaactacatgtttgtggtaataaccccaactgtgaaggtcatgttgtcgagtat
ggcgagtttaaagttaagggttacgatggacccgttgtcgagtgtgataaatgtggctcg
gacatggtgctcaaaaacggccggtttggtaagtacatgggatgcagcaatgaagagtgt
aagaatactcgtaaaatccttcgcaatggtgaaattgcgccaccaaaagaagaccccgtt
cacctaccagaactcgagtgtgaaaaatcggatgcctattttgtgttgcgagatggtgca
tcaggcctctttttagcagccagcacgttcccgaaatcaagagaaactcgtgcgccgttg
gtctctgaattggttcggttcaaagagcgaatttcacctaagttccattatttgaccgaa
gcgcctcaacaagaccccgacggtaagccaactgtggttcgctttagccgtaagactaaa
gagaactacgttcgttcagaagagggtggcaagccaacgggttggtcggctttgtttgaa
gacgggaaatggcaagttattgataaacgtaagaaataa
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