Vibrio sp. HB236076: AB0763_08445
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Entry
AB0763_08445 CDS
T10847
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vih Vibrio sp. HB236076
Pathway
vih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB0763_08445 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vih03019
]
AB0763_08445 (rne)
03009 Ribosome biogenesis [BR:
vih03009
]
AB0763_08445 (rne)
Enzymes [BR:
vih01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AB0763_08445 (rne)
Messenger RNA biogenesis [BR:
vih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AB0763_08445 (rne)
Ribosome biogenesis [BR:
vih03009
]
Prokaryotic type
rRNA processing factors
AB0763_08445 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
XDK24256
UniProt:
A0AB39HDP2
LinkDB
All DBs
Position
1:1912136..1915231
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AA seq
1031 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRVEPSLEAAFVDY
GAERHGFLPLKEIAKEYFPDGYTYQGRPSIKEVLSEGQEVIVQVEKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKAALSTLNLPQGMGLIVRTAGVGKSAEEL
EWDLNVLLNHWSAIKTASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERA
KQHIQLVRPDFLHRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLKDAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLAL
SVLRLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERTQEVKITVVPNSDMETP
HFDVIRVREGEEFDLLSYLLPQKIDQMKEAEGKESAVYEPQLKPKKIEEPVLKGFASPSQ
SAPAPTAAQEPTASAAENKPARGLFGFIKSIAQFLFGSKDSSLADNQEKSTTEQEKTQSQ
HTEKTSNKYQGNKRRRSNRDQRSDKPRQPRRNTDEQKEQDSQNQNANPSKAAKGKANSNS
QKRKSSQGKNEKSKDTQNTTKKSKVEQKGLEIAAEKQNNDESAQNNKPAQKNQQVKERRS
QRKLEKSVRTKNTAPTASAVKENAVEPAPTQDSATKTADRERPSENNVDNTQENKGRRNR
RSPRHLRANGQRRRRGRDRRPNPFRLRKGGVASPEMAMGKVMPKYTGKTYAEKKPAVDTS
QTLKVIGGVACPEMAMGKIVTPSAAITTKPAPSVPMTEKAVDVLPQTNPVVTSDVETQPV
AKAPTHSEPAVSDAVTETAQVVQNSTTPVKPAVVEETTKEQTVVEKSTDSGEQSLSATQE
TVLDDNPVAEPNIKPSYKGHASSPMTKAAGSDEIKSITINPAPWRENRYQGQGAGALSAS
NQAQAVMSKTQ
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcaaaaagaagagttgcgtgtagccttggtcgat
ggccaaaggttgtttgacctagatatcgaaagtccgggtcacgaatcaaaaaaagcgaac
atttacaaaggacgaatcacccgagtcgaacccagtttagaagccgcttttgtcgactat
ggcgctgagcgtcacggtttccttcctcttaaagaaattgccaaagaatacttcccagac
ggttacacttaccaaggccgaccgagcatcaaagaagtcctttctgaaggccaggaagtg
attgtccaagtagagaaagaagaacgcggtaacaaaggcgctgccctgactacctttatt
tctcttgctggcagctatttggttctcatgccaaacaaccctcgcgcaggcggtatttct
cgtcgcatcgaaggggatgagcgtaccgagctgaaagccgctttaagcaccttgaattta
ccacaaggtatgggactgattgttcgtaccgctggtgttggtaaaagtgccgaggagctg
gagtgggatttaaacgtgctgctcaatcattggagtgcgatcaaaaccgcctcagacagc
aacccagcgcctttcttaattcaccaagagagcaatgtcattgtccgcgctattcgcgat
tacttgcgtcgtgatattggggaaattttaattgatagtaataccatttacgaacgtgca
aaacagcacattcaattggtacgtcccgactttttacaccgagtcaaaaaatacgatggt
gaagtccctctatttagtcattatcagattgaaagccaaatagaatcggcctttcaacgc
gaagttcgcttaccttctggcggttcaattgtcatcgacccaaccgaagcgctcacttcc
attgacatcaactcggctcgcgccaccaaaggcggcgatattgaagaaacggccctaaac
accaaccttgaggccgctgatgagattgcgcgtcagctgcgtttgcgcgacctcggtggt
ctggtggttatcgattttatcgatatgacccctgttcgccaccagcgcgaagttgagaac
cgtttgaaagacgccgttcgtctagaccgtgcacgagtacaaattggccgaatttctcgc
tttggcctattggaaatgtctcgtcagcgcttaagcccatcgttggcagaagccagccat
catatctgccctcgttgtagtggtactggtgtggttcgcgacaatgagtctctcgctctc
tccgttttgcgtttgattgaagaagaggcgcttaaagacaatacggctcaagtattagcc
gtcgttcccgttcctattgcttcttacttgctcaatgaaaaacgccgttctgtgaaccac
attgaacgcactcaagaagtgaaaatcaccgttgtgcctaactccgatatggaaacgcca
cactttgatgtcattcgcgtgcgcgaaggtgaagagttcgatcttttgtcttatttgttg
ccgcaaaaaatcgaccaaatgaaagaagccgaaggcaaagagagcgcggtgtatgagcct
caactcaagcctaagaaaattgaagagcccgtgcttaagggctttgcttctccttctcaa
tcggcacccgctcccactgccgctcaagaacctacagcgtcagcggctgagaataaaccc
gctcgtggcttatttggttttatcaagtcaattgctcaattcttatttgggagtaaagat
agcagcctagccgacaaccaagagaagagtacgacagagcaagagaaaactcagtcacaa
cacactgaaaaaacctcaaacaaatatcaaggtaacaaacgtcgccgttccaaccgcgat
cagcgttcagacaagcctcgccagcctcgccgaaatacggacgagcaaaaagagcaagac
agtcagaatcaaaacgcgaatccgtccaaagcggcaaaaggcaaagcaaactcaaacagc
caaaagcgcaaatcaagccaaggtaaaaatgagaagagcaaagacactcaaaacacgact
aaaaagtctaaagttgagcaaaaaggcctcgaaattgctgccgagaaacaaaacaacgac
gaaagcgcgcaaaataataaacccgcgcaaaaaaaccaacaggttaaagaacgtcgttcg
cagcgcaaactagaaaaatcggttcgcactaaaaacacggcgccaacagcttctgctgtc
aaagagaacgctgtcgagccagcgccaactcaagattcagcgaccaaaacagctgataga
gaacgcccgagtgaaaacaacgtagacaacactcaagagaataaaggccgtcgcaatcgt
cgttcgccccgtcacttgcgtgccaatggtcagcgtcgtcgtcgcggtcgtgatcgcaga
cccaaccctttccgccttcgcaaaggaggggtcgcctctcctgagatggccatgggtaaa
gtcatgccgaagtacacgggtaagacatacgctgagaagaaacctgcggttgatacgtct
cagacactgaaagtgatcggtggcgtcgcgtgccctgaaatggcgatgggtaaaattgtc
acgccatctgcggcaattacgacgaagccggcaccaagtgtgccaatgacagagaaagcc
gtcgacgttttgccacaaaccaacccggttgtgacatccgacgtcgagacacaacctgtg
gcaaaggcgcctactcacagcgagcccgcggttagtgatgcagtgacagaaacggctcaa
gtcgttcaaaacagcacaacacctgtaaaacctgccgttgttgaagagaccactaaggaa
caaaccgtggttgaaaagagcaccgacagcggtgagcaaagcttgtcagcgactcaagaa
accgtgttagacgacaatcctgttgcagagcccaatattaagccgagttacaaagggcat
gcgagttcaccaatgactaaagccgctggcagtgatgagatcaagtcgatcactatcaac
cctgcgccatggcgtgagaatcgttatcaagggcaaggcgcaggggcactcagtgcgtcg
aaccaagctcaggctgtgatgagtaaaacgcaataa
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